| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,336,309 – 10,336,417 |
| Length | 108 |
| Max. P | 0.934091 |
| Location | 10,336,309 – 10,336,417 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 89.28 |
| Shannon entropy | 0.18719 |
| G+C content | 0.33084 |
| Mean single sequence MFE | -25.98 |
| Consensus MFE | -15.13 |
| Energy contribution | -15.77 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.13 |
| Mean z-score | -3.20 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.934091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10336309 108 + 22422827 CAUUUAAUAAUAAAGUCAAGUCAAAGGAUUAUU-CCCAAAAACCCAGCACGCAAAAAUGUCUAAUGGAUUAAGUUU-UAUAAUUGGGGAGAUCCUUUUGCUUGAGUAACU .............(.((((((.((((((((.((-((((((((((((....(((....)))....))).....))))-.....))))))))))))))).)))))).).... ( -27.50, z-score = -3.24, R) >droSim1.chrX 8040990 107 + 17042790 CAUUUAAUAAUAAAGUCAAGCCAAAGGAUUAUU-CCCAAGUACC-AGAACGCAAAAAUGCCUAAUGGAUUAAGUUU-UAUAAUUAGGGAGAUCCUUUCGCUUGAGUAACU .............(.((((((.((((((((..(-(((.....((-(....(((....)))....)))....((((.-...)))).)))))))))))).)))))).).... ( -29.10, z-score = -4.19, R) >droSec1.super_15 1043850 107 + 1954846 CAUUUAAUAAUAAAGUCAAGUCAAAGGAUUAUU-CCCAAGUACC-AGAACGCAAAAAUGUCUAAUGGAUUAAGUUU-UAUAAUUAGGGUGAUCCUUUCGCUUGAGUAACU .............(.((((((.(((((((((..-(((.....((-(....(((....)))....)))....((((.-...)))).)))))))))))).)))))).).... ( -25.10, z-score = -3.04, R) >droYak2.chrX 18909667 108 + 21770863 CAUUUAAUACCAAAGUCAAGUCAAAGGAUUAAU-CCCAUGUAGC-AGCACACAAAAAUCCCUAAUGGAUUAAGUUUCUAUAAUUGGGAAGUACCUUUCGCUUGAGUAACU .............(.((((((.((((((((..(-(((((((((.-(((.......(((((.....)))))..))).)))))..)))))))).))))).)))))).).... ( -25.60, z-score = -3.02, R) >droEre2.scaffold_4690 13953583 108 - 18748788 CAUUUAAUAAUAAAGUCAAGUCAAAGGAUUAGUGCCCAAGUACC-GACACACAAAAAUUUCGAAUGGAUUAAGUUU-UAUAAUUGAGAAGAUCCUUUCGCUUGAGUAACU .............(.((((((.((((((((.((((....)))).-............(((((((((((......))-)))..)))))).)))))))).)))))).).... ( -22.60, z-score = -2.52, R) >consensus CAUUUAAUAAUAAAGUCAAGUCAAAGGAUUAUU_CCCAAGUACC_AGCACGCAAAAAUGUCUAAUGGAUUAAGUUU_UAUAAUUGGGGAGAUCCUUUCGCUUGAGUAACU .............(.((((((.((((((((.........((.......)).........((((((................))))))..)))))))).)))))).).... (-15.13 = -15.77 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:13 2011