| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,324,937 – 10,325,040 |
| Length | 103 |
| Max. P | 0.508875 |
| Location | 10,324,937 – 10,325,040 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 69.47 |
| Shannon entropy | 0.54191 |
| G+C content | 0.46935 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -12.12 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.508875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10324937 103 - 22422827 UUUGCACAGCGAGAGAUGCGAGGAGAUGCUGCCGCAUUCGUUUUCCAUUUACAUAGA--UGACCGGAUACUUGGUCACUAUUGACCAUAUAUGGCAAUGCAAUUA .(((((..((...(((((.((((((((((....)))))..))))))))))..((((.--(((((((....)))))))))))............))..)))))... ( -27.00, z-score = -1.50, R) >droSim1.chr2L 20298266 95 - 22036055 UUAGCGCAGCGAU--------GGAGAUGCCGCCGCAUUCGUUUUCCAUUUACGUAGA--UGACCGGACACUUGGUCACUAUUGACCAUACAUGGCAAUGCAAUUA ...(((..((.((--------((((.(((((...(((((((.........)))..))--))..))).)))))(((((....)))))...))).))..)))..... ( -24.80, z-score = -1.00, R) >droSec1.super_15 1019282 95 - 1954846 UUAGCGCAGCGAU--------GGAGAUGCCGCCGCAUUCGUUUUCCAUUUACGUAGA--UGACCGGUCACUUGGUCACUAUUGACCAUACAUGGCAAUGCAAUUA ...(((..((.((--------((((.(((((...(((((((.........)))..))--))..))).)))))(((((....)))))...))).))..)))..... ( -24.80, z-score = -0.66, R) >droYak2.chrX 18897820 94 - 21770863 UUAGCGCAGCGGCG-----GUGGAAAUGCCGUUGCAUUCGUUUUCCAUU----UAGU--UGGCCAGUAUUAUGGCCAGUAUUGACCAUACAUGGCAAUGCAAUUA .....(((((((((-----.......)))))))))..............----....--((((((......))))))((((((.(((....)))))))))..... ( -35.70, z-score = -3.17, R) >droPer1.super_21 584551 99 - 1645244 UUAGCCAAGAGAC----UUUCAGUCGCGCUCUCGCGAUCUUCAGGCAGACGGACAGGACAGGACUUGUUCAUACGCACUAUU--CCAUCCACCGCAAUGCAAUUA ...(((..((((.----......(((((....)))))))))..))).(.(((...(((..(((...((.(....).))...)--)).))).)))).......... ( -20.71, z-score = 0.08, R) >consensus UUAGCGCAGCGAC________GGAGAUGCCGCCGCAUUCGUUUUCCAUUUACAUAGA__UGACCGGACACUUGGUCACUAUUGACCAUACAUGGCAAUGCAAUUA ...(((..((...........((((((((....))).....)))))..............((((((....)))))).................))..)))..... (-12.12 = -12.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:12 2011