| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,834,612 – 10,834,706 |
| Length | 94 |
| Max. P | 0.777875 |
| Location | 10,834,612 – 10,834,706 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 71.47 |
| Shannon entropy | 0.59483 |
| G+C content | 0.40220 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -11.72 |
| Energy contribution | -11.72 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10834612 94 - 23011544 -----AUUUCUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA-GCGC-----CCGUCGUCGUUAC-----GGUUUUGCCUUUGAUUUUAUUCAAGGG -----........(((.((((((((((((......)))))))))....((.....-))))-----))))(((....))-----)......(((((((......))))))) ( -24.70, z-score = -1.42, R) >droSim1.chr2L 10642141 94 - 22036055 -----AUUUCUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA-GCGC-----CCGUCGUCGUUAC-----GGUUUUGCCUUUGAUUUUAUUCAAGGG -----........(((.((((((((((((......)))))))))....((.....-))))-----))))(((....))-----)......(((((((......))))))) ( -24.70, z-score = -1.42, R) >droSec1.super_3 6252754 94 - 7220098 -----AUUUCUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA-GCGC-----CCGUCGCCGUUAC-----AGUUUUGCCUUUGAUUUUAUUCAAGGG -----..........(((((.((((((((......))))))))((...((.....-))..-----...)))))))...-----.......(((((((......))))))) ( -25.70, z-score = -2.03, R) >droYak2.chr2L 7242338 94 - 22324452 -----AUUUCUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA-GCGU-----CCGUCGUCGUUAC-----UGUUUUGCCUUUGAUUUUAUUCAAGGG -----........(((((((.((((((((......))))))))((...((.....-)).)-----).)))).)))...-----.......(((((((......))))))) ( -24.40, z-score = -1.92, R) >droEre2.scaffold_4929 12045427 94 + 26641161 -----AUUUCUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA-GCGC-----CCGUCGUUGUUAC-----GGUUUUGCCUUUGAUUUUAUUCAAGGG -----........(((.((((((((((((......)))))))))....((.....-))))-----))))(((....))-----)......(((((((......))))))) ( -25.50, z-score = -1.80, R) >droAna3.scaffold_12916 14690007 95 - 16180835 ----AUUUUUUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA-GCGU-----CUGUCGUUGUUAC-----GGUAUUGCUUUUGAUUUUGUUCAAGGG ----.........((((.(((((((((((......))))))))....))).....-))))-----.(..(((....))-----)..)...(((((((......))))))) ( -20.60, z-score = -0.39, R) >dp4.chr4_group4 3039576 90 - 6586962 GGUUUUUUUUUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACUGAAAGCUUUCU-GCGU-----CUGUCGUCGUUG--------------UUAUGGCUUUGUUCAAGAG ...........((((((((((((((((((......))))))))....))))....-))))-----.....(((((..--------------..))))).........)). ( -17.40, z-score = 0.29, R) >droPer1.super_10 2054398 89 - 3432795 -GGUUUUUUUUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACUGAAAGCUUUCU-GCGU-----CUGUCGUCGUUG--------------UUAUGGCUUUGUUCAAGAG -..........((((((((((((((((((......))))))))....))))....-))))-----.....(((((..--------------..))))).........)). ( -17.40, z-score = 0.31, R) >droWil1.scaffold_180703 405402 107 + 3946847 --GCUGUGUAUGUGUGUGUGUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA-ACGCUUUUGCUGUUUUCGUUGUUAUGGGAUUUUGCUUUUGAUUUUAUUCAAAAG --((.((((.((.((((...(((((((((......)))))))))....)))).))-))))....))...(..(((....)))..).....(((((((......))))))) ( -25.80, z-score = -1.90, R) >droMoj3.scaffold_6500 13574102 103 + 32352404 -----CCUUUUUUCUGGUUCUGUGUUGUCAUUUGAGAUAAUAUGAAAAGCAUUCAGGCUUUGGAGCCUUUGUCCUUUUGUUUCGCCGUCGCCUUUGAUUGCACUUGAG-- -----..........((((((((((((((......))))))))..(((((......)))))))))))................((.((((....)))).)).......-- ( -21.80, z-score = -0.41, R) >droVir3.scaffold_12963 4425054 107 + 20206255 UCUUUAUUUUUCGUUGCUUCUGUGUUGUCAUUUGAGAUAAUAUGAAAAGCAUUCAGGCUUUGCAGCAUUUGUCCUUUUGUUGCGCU-UCGCCUUUGAUUGUAUUCAAG-- ..............(((((..((((((((......))))))))...)))))...((((..(((((((..........)))))))..-..))))((((......)))).-- ( -24.00, z-score = -1.43, R) >droGri2.scaffold_15126 2067452 105 - 8399593 --AUUUCAUUUUGUCGCUUUUGCGUUGUCAUUUGAGAUAAAACGAAAAGCAUUCAGGCUUUGCAACAUUUUUGCUUUUAUUUC-CCAUCAGCUUUGAUUGUAUUCAAG-- --.............((....))((((......(((((((((...(((((......)))))((((.....)))))))))))))-....)))).((((......)))).-- ( -18.20, z-score = -0.20, R) >consensus _____AUUUUUUCACGCGGCUGUGUUGUCAUUUGAGAUAAUACGAAAAGCAUUCA_GCGU_____CCGUCGUCGUUAC_____GGUUUUGCCUUUGAUUUUAUUCAAGGG ...............((...(((((((((......)))))))))....)).........................................((((((......)))))). (-11.72 = -11.72 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:07 2011