Locus 13968

Sequence ID dm3.chrX
Location 10,318,053 – 10,318,156
Length 103
Max. P 0.782000
window19214

overview

Window 4

Location 10,318,053 – 10,318,156
Length 103
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.50
Shannon entropy 0.24278
G+C content 0.39624
Mean single sequence MFE -28.59
Consensus MFE -22.04
Energy contribution -22.27
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -1.82
Structure conservation index 0.77
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.67
SVM RNA-class probability 0.782000
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10318053 103 - 22422827
UUUUGUUUUUAUUCGACGGGGGGCGUCUCGAAAAGGGACAGCCCCAGUUAAUAUAAAAGCGCGAAGGAAAGCUAUUUUUAUAAAUUCAAUUUGACACAUACGU-----------------
....((((((((..(((..((((((((((.....))))).))))).)))...))))))))((........))...............................----------------- ( -28.20, z-score =  -2.71, R)
>droSim1.chrX_random 2916872 120 - 5698898
UUUUUUUUUUAUUUGACGGGGGGCCUUUCGAAAAGGGACAGCCCCAGUUAAUAUAAACGCGCGAAGGAAAGCUAUUUUUAUAAAUCCAAUUUGACACACCCUUGCCGCUUAUAUUACGAA
................((.(((((..(((......)))..)))))...((((((((.((.((.((((................................)))))))).)))))))))).. ( -24.25, z-score =  -0.02, R)
>droSec1.super_15 1012812 115 - 1954846
-----UUUUUAUUUGACGGGGGGCGUCUCGAAAAGGGACAGCCCCAGUUAAUAUAAACGCGCGAAGGAAAGUUAUUUUUAUAAAUCCAAUUUGACACACCCUUGCCGCUUAUAUUACGAA
-----...........((.((((((((((.....))))).)))))...((((((((.((.((((.((...((((.................))))...)).)))))).)))))))))).. ( -33.33, z-score =  -2.72, R)
>consensus
UUUU_UUUUUAUUUGACGGGGGGCGUCUCGAAAAGGGACAGCCCCAGUUAAUAUAAACGCGCGAAGGAAAGCUAUUUUUAUAAAUCCAAUUUGACACACCCUUGCCGCUUAUAUUACGAA
.......((((((((((..((((((((((.....))))).))))).))))).))))).((.(....)...))................................................ (-22.04 = -22.27 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:10 2011