| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,295,377 – 10,295,428 |
| Length | 51 |
| Max. P | 0.694662 |
| Location | 10,295,377 – 10,295,428 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 95.33 |
| Shannon entropy | 0.08330 |
| G+C content | 0.41026 |
| Mean single sequence MFE | -6.64 |
| Consensus MFE | -6.64 |
| Energy contribution | -6.64 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.90 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694662 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10295377 51 - 22422827 CAAUUUCAUAUCAAGUA-CCAUCGCCAAAACGGAAAUCUCCUUCGUGGUUUC .................-.....((((....(((....)))....))))... ( -6.50, z-score = -1.05, R) >droSim1.chrX_random 2907438 51 - 5698898 CAAUUUCAUAUCAAGUA-CCAUCGCCAAAACGGAAAUCUCCUUCGUGGUUUC .................-.....((((....(((....)))....))))... ( -6.50, z-score = -1.05, R) >droSec1.super_15 991650 51 - 1954846 CAAUUUCAUAUCAAGUA-CCAUCGCCAAAACGGAAAUCUCCUUCGUGGUUUC .................-.....((((....(((....)))....))))... ( -6.50, z-score = -1.05, R) >droYak2.chrX 18867968 52 - 21770863 CAAUUUCAUAUCAAGUAGCAAUCGCCAAAAUGGAAAACUCCUUCGUGGUUUG .......................((((....(((....)))....))))... ( -7.20, z-score = -0.85, R) >droEre2.scaffold_4690 13911390 51 + 18748788 CAAUUUCAUAUCAAGUG-CCAUCGCCAAAACGGAAAUCUCCUUCGUGGUUUC .................-.....((((....(((....)))....))))... ( -6.50, z-score = -0.52, R) >consensus CAAUUUCAUAUCAAGUA_CCAUCGCCAAAACGGAAAUCUCCUUCGUGGUUUC .......................((((....(((....)))....))))... ( -6.64 = -6.64 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:07 2011