| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,282,000 – 10,282,062 |
| Length | 62 |
| Max. P | 0.671142 |
| Location | 10,282,000 – 10,282,062 |
|---|---|
| Length | 62 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 86.27 |
| Shannon entropy | 0.23008 |
| G+C content | 0.55400 |
| Mean single sequence MFE | -11.45 |
| Consensus MFE | -10.14 |
| Energy contribution | -10.06 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10282000 62 - 22422827 CAAAUGGUUGUGGCCUACCUCGACCAUCUCGCUCAAUCUGCCCCUUUUGCCCAUCGCCCAUC ...(((((((.((....)).)))))))...((.......))..................... ( -11.00, z-score = -1.20, R) >droEre2.scaffold_4690 13894837 54 + 18748788 CAAAUGGCUGUGGCCUACCUCGACCAUCUCGUUCAAUCUGCCCCUUUU-CCCAUU------- ..(((((..(.(((......(((.....)))........))).)....-.)))))------- ( -6.64, z-score = -0.14, R) >droYak2.chrX 18856386 54 - 21770863 CAAAUGGUUGGGGCCUACCGCGGCCAUCACGCUCAAUCUGCCCCUUUU-CCCAUU------- ..(((((..(((((.....(((.......))).......)))))....-.)))))------- ( -16.10, z-score = -1.25, R) >droSec1.super_15 979574 62 - 1954846 CUAAUGGUUGUGGCCUACCUCGACCAUCUCGCUCAAUCUGCCCCUUUUGCCCAUUGCCCAUC ...(((((((.((....)).)))))))...(..((((..((.......))..))))..)... ( -11.70, z-score = -1.70, R) >droSim1.chrX 8006445 62 - 17042790 CAAAUGGUUGUGGCCUACCUCGACCAUCUCGCUCAAUCUGCCCCUUUCGCCCAUUGCCCAUC ...(((((((.((....)).)))))))...(..((((..((.......))..))))..)... ( -11.80, z-score = -1.58, R) >consensus CAAAUGGUUGUGGCCUACCUCGACCAUCUCGCUCAAUCUGCCCCUUUUGCCCAUUGCCCAUC ...(((((((.((....)).)))))))...((.......))..................... (-10.14 = -10.06 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:04 2011