| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,280,983 – 10,281,085 |
| Length | 102 |
| Max. P | 0.542228 |
| Location | 10,280,983 – 10,281,085 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.28 |
| Shannon entropy | 0.44310 |
| G+C content | 0.44511 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -10.25 |
| Energy contribution | -11.51 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.542228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10280983 102 + 22422827 ACUAACAGUGAUCGCGCUGUUAAGCACGCCAUCU--CUGUCCUGCGCUAAUGUCUCCCA-AAUGAUUUUUGGUUUAUUAGCUGUGUUUUUUCUUGUUUCGCCUAU ..((((((((....))))))))(((((((.....--.......))(((((((....(((-((.....)))))..))))))).))))).................. ( -23.50, z-score = -2.38, R) >droPer1.super_21 537074 98 + 1645244 CCUAACAGACAGCGA---GAGAGGCGGGCCAUCAGGCAGCAUCUCUCUGUUGUGAUC---ACUUAACAGAGCUCUAUU-GCUCUCCCCCUCCCAUUCGCACUCGC .......((..((((---(.((((.(((((....)))((((...((((((((.....---...))))))))......)-)))...))))))...)))))..)).. ( -31.20, z-score = -1.68, R) >droEre2.scaffold_4690 13893635 102 - 18748788 GCUAACAGCGAUCGCGCUGUUAAGCACGCCAUCU--CUGUCCGGCGCUAAUGUCUUCCA-AAUGAUUUUUGGUUUAUUAGCUGUGUUUUUUCUUGUUUCGCCUAU ((((((((((....))))))))((((((((....--......)))(((((((....(((-((.....)))))..))))))).)))))............)).... ( -31.40, z-score = -3.82, R) >droYak2.chrX 18855309 103 + 21770863 GCUAACAGUGAUCGCGCUGUAAAGCACGCCAUCU--CUGUCCUGCGCCAACGUCUUCCAAAUGGAUUUAUAGUUUAUUAGCUGUGUUUUUUCUUGUUUCGCCUAU ((..((((.(((.(((.((.....))))).))).--))))...))((.((((...(((....)))..(((((((....)))))))........))))..)).... ( -23.10, z-score = -1.41, R) >droSec1.super_15 978538 103 + 1954846 ACUAACAGUGAUCGCGCUGUUAAGCACGCCAUCU--CUGUCCUGCGCUAAUGUCUUCUUUAAUGAUUUUUGGUUUAUUAGCUGUGUUUUUUCUUGUUUCGCCAAU ..((((((((....))))))))(((((((.....--.......))(((((((....((..((....))..))..))))))).))))).................. ( -18.90, z-score = -0.50, R) >droSim1.chrX 8005397 102 + 17042790 ACUAACAGUGAUCGCGCUGUUAAGCACGCCAUCU--CUGUCCUGCGCUAAUGUCUUCCA-AAUGAUUUUUGGUUUAUUAGCUGUGUUUUUUCUUGUUUCGCCUAU ..((((((((....))))))))(((((((.....--.......))(((((((....(((-((.....)))))..))))))).))))).................. ( -24.20, z-score = -2.56, R) >consensus ACUAACAGUGAUCGCGCUGUUAAGCACGCCAUCU__CUGUCCUGCGCUAAUGUCUUCCA_AAUGAUUUUUGGUUUAUUAGCUGUGUUUUUUCUUGUUUCGCCUAU ..((((((((....))))))))(((((((..............))(((((((......................))))))).))))).................. (-10.25 = -11.51 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:31:04 2011