| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,271,746 – 10,271,843 |
| Length | 97 |
| Max. P | 0.523269 |
| Location | 10,271,746 – 10,271,843 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.01 |
| Shannon entropy | 0.43961 |
| G+C content | 0.54512 |
| Mean single sequence MFE | -38.63 |
| Consensus MFE | -20.35 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10271746 97 + 22422827 ---------UGGACGUGGACGCUGAGUGCGCAGUAGAGUGCGAGCGUGGU---------GAUGCUGUUGUGGCUCCCAUCUCAUAG-----CAUCACUGAAUAACAUGGCCUUAUGACGU ---------.((.((((.(((((...(((((......))))))))))(((---------((((((((.((((...))))...))))-----)))))))......)))).))......... ( -34.80, z-score = -0.99, R) >droSim1.chrX 7995592 97 + 17042790 ---------UGGCCGUGGACGCUGAGUGCGUAGUAAAGUGCGAGCGUGGU---------GAUGCUGUUGUGGCUCCCACCUCAUAG-----CAUCACUGAAUAACAUGGCCUUAUGACGU ---------.(((((((.(((((..(..(........)..).)))))(((---------((((((((.((((...))))...))))-----)))))))......)))))))......... ( -42.70, z-score = -3.80, R) >droSec1.super_15 968891 97 + 1954846 ---------UGGCCGUGGACGCUGAGUGCGUAGUAGAGUGCGAGCGUGGU---------GAUGCUGUUGUGGCUCCCACCUCAUAG-----CAUCACUGAAUAACAUGGCCUUAUGACGU ---------.(((((((.(((((..(..(........)..).)))))(((---------((((((((.((((...))))...))))-----)))))))......)))))))......... ( -42.70, z-score = -3.47, R) >droYak2.chrX 18846005 106 + 21770863 CGAUGUCGGUGGCGGUGGACGCUGGGUGCGCAGUAGCGUGCGAGCGUGGU---------GAUGCUGCUGUGGCUGCCACCUCAUGG-----CGUCACUGAACAACAUUGCCUUGUGGCGU .(((((..((..(((((.((((((((((.(((((.(((.((.(((((...---------.)))))))))).))))))))))...))-----)))))))).)).)))))(((....))).. ( -47.80, z-score = -0.85, R) >droEre2.scaffold_4690 13884298 97 - 18748788 ---------AGGCGGUGGACGCUGAGUGCGCAGUAGAGUGCGAGCGUGGU---------GGUGCUGCUGUGGCUCCCACCUCAUGG-----CAUCACUGAAUAACAUGGCCUUAUGACGU ---------((((.(((.(((((...(((((......))))))))))(((---------(((((((.((.((......)).)))))-----)))))))......))).))))........ ( -37.40, z-score = -0.38, R) >droWil1.scaffold_180588 1107780 111 + 1294757 ---------UGGUGGUGGCCGCCUUGUGCACAGCAACAAAUGGGCAUGGUUGUGAUUAUAAUGAUGUUUGGGUUUUUUCUCCAAAGACAAACCGUGUCGAAUAAACUGCUCAUUUAUCGU ---------((((.(..((((((((((((...)).)))...))))..)))..).))))..((((((..(((((..(((.......((((.....))))....)))..)))))..)))))) ( -26.40, z-score = 0.67, R) >consensus _________UGGCCGUGGACGCUGAGUGCGCAGUAGAGUGCGAGCGUGGU_________GAUGCUGUUGUGGCUCCCACCUCAUAG_____CAUCACUGAAUAACAUGGCCUUAUGACGU ..........(((((((.(((((..((((........)))).)))))............((((...((((((........)))))).....)))).........)))))))......... (-20.35 = -20.30 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:59 2011