| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,262,937 – 10,263,034 |
| Length | 97 |
| Max. P | 0.876874 |
| Location | 10,262,937 – 10,263,034 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.59 |
| Shannon entropy | 0.35602 |
| G+C content | 0.40576 |
| Mean single sequence MFE | -24.20 |
| Consensus MFE | -17.64 |
| Energy contribution | -17.84 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.876874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10262937 97 - 22422827 CUUAUAUAAGUAUUAGAAACGCAUAAAUAGAUUGCGUAGAUCAUGUGGUCGAGAAAAGGGCAACUA-UUGGCUGCCACAGAGUUAUUUGGA---UGGAAAG------------------- .((((.((((((......(((((.........)))))...((.((((((.(...((.((....)).-))..).))))))))..)))))).)---)))....------------------- ( -19.70, z-score = -1.01, R) >droEre2.scaffold_4690 13875806 97 + 18748788 CUUAUAUAAGCAUUAGGAACGCAUAAAUAGACUGCAUGAAUCAUGUGGUCGCGAGAAGGGCAGCUA-UUGGCUGCCCCAGAGUUAUUUGAG---CAGAAGG------------------- ....................((.(((((((((..((((...))))..))).......(((((((..-...)))))))......)))))).)---)......------------------- ( -30.70, z-score = -2.59, R) >droYak2.chrX 18836767 120 - 21770863 CUUAUAUAAGUAUUAGAAACGCAUAAAUAGAUUGCAUGAAUCAUGUGGUCGAUGGAAGGGCAGCUACUUAUUUGACACAAAAACAAAAGGGGUUUCGGGAGUUGGGAAUUGGGCAUAGUG ...................(((.......(((..((((...))))..)))............(((.....((..((.(..((((.......))))..)..))..)).....)))...))) ( -19.20, z-score = 0.46, R) >droSec1.super_15 960187 95 - 1954846 CUUAUGUAAGUAUUAGAAACGCAUAAAUAGAUUGCAUGAAUCAUGUGGUCGAGGAAAGGGCAGCUA-UAGGCUGCCAC--AGUUAUUUGGA---UGGAAAG------------------- .((((.((((((.................(((..((((...))))..)))........((((((..-...))))))..--...)))))).)---)))....------------------- ( -25.70, z-score = -2.69, R) >droSim1.chrX 7987072 97 - 17042790 CUUAUGUAAGUAUUAGAAACGCAUAAAUAGAUUGCAUGAAUCAUGUGGUCGAGGAAAGGGCAGCUA-UUGGCUGCCACAGAGUUAUUUGGA---UGGAAAG------------------- .((((.((((((.................(((..((((...))))..)))........((((((..-...)))))).......)))))).)---)))....------------------- ( -25.70, z-score = -2.53, R) >consensus CUUAUAUAAGUAUUAGAAACGCAUAAAUAGAUUGCAUGAAUCAUGUGGUCGAGGAAAGGGCAGCUA_UUGGCUGCCACAGAGUUAUUUGGA___UGGAAAG___________________ .............................(((..((((...))))..)))........(((((((....)))))))............................................ (-17.64 = -17.84 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:58 2011