| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,262,518 – 10,262,616 |
| Length | 98 |
| Max. P | 0.592040 |
| Location | 10,262,518 – 10,262,616 |
|---|---|
| Length | 98 |
| Sequences | 13 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 71.36 |
| Shannon entropy | 0.57068 |
| G+C content | 0.62920 |
| Mean single sequence MFE | -37.63 |
| Consensus MFE | -23.33 |
| Energy contribution | -23.23 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10262518 98 + 22422827 ---------------------GCACGCCGGGCAAGGCAACGGGACGCGGCUGCUAUUUCUCGCUGGCCUUCUCCAUCGGUUCGAUGGGCCUGGCCUGCGGCAGCCUGUGGCAGAUACCG ---------------------....((((((((((((..(((((.((....))....)))))...)))))..((((((...)))))))))))))((((.((.....)).))))...... ( -42.50, z-score = -0.49, R) >droEre2.scaffold_4690 13875390 98 - 18748788 ---------------------GAAUGCCGGGCAAGGCAACGGGCCGCGGCUGCUACUUCUCGCUGGCCUUCUCCAUUGGAUCGAUGGGCCUGGCCUGCGGCAGCCUGUGGCAGAUACCC ---------------------...((((......))))....(((((((((((.......(((.((((...(((((((...)))))))...)))).))))))))).)))))........ ( -45.21, z-score = -1.21, R) >droYak2.chrX 18836333 98 + 21770863 ---------------------GAACGUCGGGCAAGGCAACGGGACGCGGCUGCUACUUCUCGCUGGCCUUCUCCAUUGGUUCGAUGGGCCUGGCCUGCGGCAGCCUGUGGCAGAUACCC ---------------------....(((..((..(....)....(((((((((.......(((.((((...(((((((...)))))))...)))).))))))))).))))).))).... ( -38.01, z-score = 0.21, R) >droSec1.super_15 959771 98 + 1954846 ---------------------GCAUGCCGGGCAAGGCAACGGGACGCGGCUGCUACUUCUCGCUGGCCUUCUCCAUCGGUUCGAUGGGCCUGGCCUGCGGCAGCCUGUGGCAGAUACCG ---------------------((.((((......))))......(((((((((.......(((.((((...(((((((...)))))))...)))).))))))))).)))))........ ( -42.91, z-score = -0.55, R) >droSim1.chrX 7986656 98 + 17042790 ---------------------GCACGCCGGGCAAGGCAACGGGACGCGGCUGCUACUUCUCGCUGGCCUUCUCCAUCGGUUCGAUGGGCCUGGCCUGCGGCAGCCUGUGGCAGAUACCG ---------------------....((((((((((((..(((((.((....))....)))))...)))))..((((((...)))))))))))))((((.((.....)).))))...... ( -42.50, z-score = -0.43, R) >droWil1.scaffold_180588 1100411 96 + 1294757 ----------------------GAGUCCCGUCCUCGUG-CACGCCAUGGAUGUUACUUUUCUCUAGCCUUCUCCAUUGGUUCAAUGGGGCUGGCUUGCGGCAGUCUUUGGCAAAUUCCG ----------------------(((.......)))...-...((((.((((((..(........((((..((((((((...))))))))..)))).)..))).))).))))........ ( -28.90, z-score = -0.99, R) >droPer1.super_25 389922 95 + 1448063 ----------------------AAUCACCGGCCAGGC--CGCGUCGCGGUUGCUAUUUCUCGCUGGCCUUCUCCAUUGGGUCGAUGGGACUGGCCUGCGGCAGCCUCUGGCAGAUACCG ----------------------.(((....((((((.--.(((((((((..((((..(((((.((((((........)))))).))))).))))))))))).)).)))))).))).... ( -37.90, z-score = -0.52, R) >dp4.chrXL_group1a 2251564 95 - 9151740 ----------------------AAGCACCGGCCAGGC--CGCGUCGCGGUUGCUAUUUCUCGCUGGCCUUCUCCAUUGGGUCGAUGGGACUGGCCUGCGGCAGCCUCUGGCAGAUACCG ----------------------........((((((.--.(((((((((..((((..(((((.((((((........)))))).))))).))))))))))).)).))))))........ ( -37.80, z-score = -0.01, R) >droAna3.scaffold_13335 862414 94 - 3335858 -------------------------GCUGGAAAAGAAGCCGCGUCGCGGCUGUUACUUCUCAUUGGCAUUCUCCAUUGGCUCGAUGGGAUUGGCAUGCAGCAGCCUGUGGCAGAUCCCC -------------------------((((((.(((.((((((...))))))....))).))..((.((.((.((((((...)))))))).)).))..)))).(((...)))........ ( -31.30, z-score = 0.31, R) >droVir3.scaffold_12932 74710 89 + 2102469 ------------------------------CGAUGCCGUUACGUUGCGGCUGUUAUUUCUCGCUGGCUUGCUCCAUUGGCUCGAUGAGCUUGGCCUGCGGCAGCCUAUGGCAAAUACCG ------------------------------...((((((......))((((((.......(((.((((.((((.((((...))))))))..)))).)))))))))...))))....... ( -32.71, z-score = -1.32, R) >droMoj3.scaffold_6473 14718607 89 - 16943266 ------------------------------CGAUGCCACUGCGAUGCGGCUGCUACUUCUCGCUGGCCUGUUCCAUUGGCUCGAUGAGCCUUGCCUGCGGCAGCCUGUGGCAAAUCCCG ------------------------------...((((((.((...))((((((.......(((.(((..........(((((...)))))..))).))))))))).))))))....... ( -33.51, z-score = -1.31, R) >droGri2.scaffold_15203 4525715 89 - 11997470 ------------------------------CGCUGCCGAUGAGCUGUGGAUGCUACUUCUCGCUGGCCUGUUCGAUUGGAUCGAUGGGUUUGGCCUGCGGCAGUUUGUGGCAAAUACCG ------------------------------...((((.(..(((((((((.......)))(((.((((...((.((((...)))).))...)))).)))))))))..)))))....... ( -31.40, z-score = -1.02, R) >anoGam1.chr3L 22849652 116 - 41284009 CGACCGAACGCCGCCAGAGGAUGGUGGAGGAAAAGCUAAACACGCGCGGCUGCGUCUUCUCGCUGCUCUACUCGGUCGGCUCGUUCGCGCUGGCUUGCGCAAGCCUGUC-CACGCUC-- .((.(((..((((((((((..((((((((((..((((..........))))...))))).)))))..)).)).)).))))))).))(((.((((..((....))..).)-)))))..-- ( -44.60, z-score = 0.29, R) >consensus _______________________A_GCCGGGCAAGGCAACGCGACGCGGCUGCUACUUCUCGCUGGCCUUCUCCAUUGGUUCGAUGGGCCUGGCCUGCGGCAGCCUGUGGCAGAUACCG ...............................................((((((.......(((.((((...(((((((...)))))))...)))).))))))))).............. (-23.33 = -23.23 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:57 2011