| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,258,167 – 10,258,278 |
| Length | 111 |
| Max. P | 0.651144 |
| Location | 10,258,167 – 10,258,278 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 83.48 |
| Shannon entropy | 0.28365 |
| G+C content | 0.44201 |
| Mean single sequence MFE | -32.06 |
| Consensus MFE | -23.91 |
| Energy contribution | -24.99 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651144 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10258167 111 - 22422827 -GCCCGCUGCUUUUCCGGCAUGAAAAGCAGUGAAAGUUUUUAAAUUGCAUUAACCUGGGCAAUGGA---GAGUUACUAACUCAUGAA---UGAUGGUGCGUCAUUGGAAACGUGAAAA -...(((((((((((......)))))))))))...((((((((..(((((((.((........)).---((((.....)))).....---...)))))))...))))))))....... ( -32.50, z-score = -1.94, R) >droSim1.chrX 7982286 114 - 17042790 -GCCCGCUGCUUUUCCGGCAUGAAAAGCAGUGAAAGUUUCUAAAUUGCAUUAACCUGGGGAAUUGA---GAGUUACUAACUCAUGGAUGGUGGUGGUGCGUCAUUGGAAACGUGAAAA -...(((((((((((......)))))))))))...((((((((..(((((((.((......(((.(---((((.....)))).).)))...)))))))))...))))))))....... ( -36.00, z-score = -2.26, R) >droSec1.super_15 955468 114 - 1954846 -GCCCGCUGCUUUUCCGGCAUGAAAAGCAGUGAAAGUUUCUAAAUUGCAUUAACCUGGGGAAUUGA---GAGUUACUAACUCAUGGAUGGUGGUGGUGCGUCAUUGGAAACGUGAAAA -...(((((((((((......)))))))))))...((((((((..(((((((.((......(((.(---((((.....)))).).)))...)))))))))...))))))))....... ( -36.00, z-score = -2.26, R) >droYak2.chrX 18831787 112 - 21770863 UAACCGCCGCUUUUCCGGUUUGAGCAGCAGUGAAAGUUUCUAAAUUGCAUUAACCUGGCUUAUGCACUUAACUAACUAACUCAUGGA------UAGUGCGUCAUCGGAAACGAGAAAA .....(((((((.........)))).(((((............)))))........)))..(((((((...(((.........))).------.)))))))..(((....)))..... ( -24.90, z-score = -0.28, R) >droEre2.scaffold_4690 13871092 108 + 18748788 -ACCCGGCGCUUUUCCGGUAUGAAAACCAGCGAAAGUUUCUAAACUGCAUUAACCUGGGGGGAAUG---GAGUUACUAACUCAUGGA------UAGUGCGUCAUCGGAAACGUGAACA -.....(((((..((((((......)))(((....)))....((((.((((..((...))..))))---.))))..........)))------.))))).(((.((....)))))... ( -30.90, z-score = -1.01, R) >consensus _GCCCGCUGCUUUUCCGGCAUGAAAAGCAGUGAAAGUUUCUAAAUUGCAUUAACCUGGGGAAUGGA___GAGUUACUAACUCAUGGA___UG_UGGUGCGUCAUUGGAAACGUGAAAA ....(((((((((((......)))))))))))...((((((((..(((((((.((((((....................)))).)).......)))))))...))))))))....... (-23.91 = -24.99 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:56 2011