| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,255,154 – 10,255,258 |
| Length | 104 |
| Max. P | 0.671678 |
| Location | 10,255,154 – 10,255,258 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 94.94 |
| Shannon entropy | 0.08893 |
| G+C content | 0.41190 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -21.42 |
| Energy contribution | -21.46 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10255154 104 - 22422827 CACUGUAAAUAGCAACUUUUUAUUGGCA-UUUUUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAAAGUCUCACGGG ..((((....(((..(........)(((-(((.....((.((((((((.......)))))))))))))))))))((((..((((....))))..))))..)))). ( -26.50, z-score = -2.02, R) >droSim1.chrX 7979517 105 - 17042790 CACUGUAAAUAGCAACUUUUUAUUGGCAUUUUUUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAUAGUCUCACGGG ..((((....(((..(........)((((((......((.((((((((.......)))))))))))))))))))(((((.((((....)))).)))))..)))). ( -28.40, z-score = -2.75, R) >droSec1.super_15 953066 105 - 1954846 CACUGUAAAUAGCAACUUUUUAUUGGCAUUUUUUUGAACGCAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAUAGUCUCACGGG ..((((....(((..(........)((((((......((.((((((((.......)))))))))))))))))))(((((.((((....)))).)))))..)))). ( -28.40, z-score = -2.28, R) >droYak2.chrX 18828886 104 - 21770863 CACUGUAAAUGGCAACUUUUUAUUGGGA-UUUUUCGAACACAUGUUUCACUUUACGAAGCAUGGCAAGUGCGCAGACUAACGAGGCGAAUCGAAAGUCUCACGGG ..((((....(....)........((((-((((.(((...((((((((.......)))))))).......(((...(....)..)))..))))))))))))))). ( -27.60, z-score = -2.16, R) >droEre2.scaffold_4690 13868335 104 + 18748788 CACUGUAAAUAGCAACAUUUUAUUGGUA-UUUCUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCAGACUAACGAUGCGAAUCGAAAGUCUCACGGG ..((((.....((..((......))(((-(((.....((.((((((((.......))))))))))))))))))(((((..((((....))))..))))).)))). ( -26.10, z-score = -1.91, R) >consensus CACUGUAAAUAGCAACUUUUUAUUGGCA_UUUUUUGAACACAUGUUUCACUUUACGAAGCAUGGUAAGUGCGCUGACUAACGAUGCGAAUCGAAAGUCUCACGGG ..((((.....((...........................((((((((.......))))))))((....)))).((((..((((....))))..))))..)))). (-21.42 = -21.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:55 2011