| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,239,962 – 10,240,099 |
| Length | 137 |
| Max. P | 0.885399 |
| Location | 10,239,962 – 10,240,099 |
|---|---|
| Length | 137 |
| Sequences | 4 |
| Columns | 137 |
| Reading direction | forward |
| Mean pairwise identity | 96.59 |
| Shannon entropy | 0.05467 |
| G+C content | 0.53789 |
| Mean single sequence MFE | -45.95 |
| Consensus MFE | -44.88 |
| Energy contribution | -44.75 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.885399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10239962 137 + 22422827 CUCUGUGCAGCGCCGCAACGAUGAUGAUUAAGGUGGUGUUGACGAGGUCGACACAACCGCAGGACCCCAAAAACGAGGAGCGACAACCGCAAACUACACUGGUUUUUGGCUGUGUCGCUUCUUGGCCCCAAAAACAA .(((((((((((((((...(((....)))...))))))))).((....)).......))))))..........((((((((((((.(((.(((((.....))))).)))...))))))))))))............. ( -45.80, z-score = -1.41, R) >droEre2.scaffold_4690 13860166 132 - 18748788 CACUGUGCAGCGCCGCAACGAUGAUGAUUAAGGUGGUGUUGACGAGGUCGACACAACCGCAGGACCCCAAAAACGAGGAGCGACAACCGCGAACUACACUGGUUUUUGGCUGUGUCGCUUCUUGGCCCCAAA----- ..((((((((((((((...(((....)))...))))))))).((....)).......)))))...........((((((((((((.(((.(((((.....))))).)))...))))))))))))........----- ( -46.10, z-score = -1.48, R) >droYak2.chrX 18820977 137 + 21770863 CACUGUGCAGCGCCGCAACGAUGAUGAUUAAGGUGGUGUCGACGAGGUCGACACAACCGCAGGACCCCAAAAACGAGGAGCGACAACCGCAAACUACACUGGUUUUUGGCUGUGUCGCUUCUUGGCCCCAAAAACAA ..((((((......))...............(((.((((((((...)))))))).)))))))...........((((((((((((.(((.(((((.....))))).)))...))))))))))))............. ( -47.80, z-score = -1.88, R) >droSec1.super_15 945785 137 + 1954846 CUCUGUGCAGCGCCGCAACGAUGAUGAUUAAGUUGGUGUUGACGAGGUCGACACAACCGCAGGACCCCAAAAACGAGGAGCGACAACCGCAAACUACACUGGUUUUUGGCUGUGUCGCUUCUUGGCCCCAAAAACAA .((((((((((....((.......)).....))))((((((((...))))))))...))))))..........((((((((((((.(((.(((((.....))))).)))...))))))))))))............. ( -44.10, z-score = -1.27, R) >consensus CACUGUGCAGCGCCGCAACGAUGAUGAUUAAGGUGGUGUUGACGAGGUCGACACAACCGCAGGACCCCAAAAACGAGGAGCGACAACCGCAAACUACACUGGUUUUUGGCUGUGUCGCUUCUUGGCCCCAAAAACAA ..((((((......))...............(((.((((((((...)))))))).)))))))...........((((((((((((.(((.(((((.....))))).)))...))))))))))))............. (-44.88 = -44.75 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:54 2011