| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,233,644 – 10,233,743 |
| Length | 99 |
| Max. P | 0.568523 |
| Location | 10,233,644 – 10,233,743 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 65.33 |
| Shannon entropy | 0.60411 |
| G+C content | 0.50256 |
| Mean single sequence MFE | -20.62 |
| Consensus MFE | -12.52 |
| Energy contribution | -11.64 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.39 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10233644 99 + 22422827 CUUCGUAUCAAAGUGAAACUUUGGGGCUCUAUUAAAUGCAAACUAUUCUCCGCAAAUGCCUUGCGGACUUCAAAGUUGGCCCCCUCACAC-ACACACCCC--------------- ............((((......((((((............((((....(((((((.....)))))))......)))))))))).))))..-.........--------------- ( -22.20, z-score = -1.69, R) >droEre2.scaffold_4690 13853114 113 - 18748788 CUUCGUAUCAAAGUGAAACUUUGGGGCUCUAUUAAAUGCAAACUAUUCUCCGCAAAUGCCUUGCGGACUUCAAAGUUGGCCCCCACAUCCACCCACAUCAACCCACAUCUCCC-- ............(((.......((((((............((((....(((((((.....)))))))......))))))))))......))).....................-- ( -21.02, z-score = -0.86, R) >droYak2.chrX 18814821 115 + 21770863 CUGCGUAUCAAAGUGAAACUUUGGGGCUCUAUUAAAUGCAAACUAUUCUCCGCAAAUGCCUUCCGGACUUCAAAGUUGGCUCCCCCUCCCUGCACCCUCCCCCCCCACAUUUCCC ............(((.......(((((..........((.((((....((((.((.....)).))))......)))).))...........)).)))........)))....... ( -15.96, z-score = 1.31, R) >droSec1.super_15 936520 93 + 1954846 CUUCGUAUCAAAGUGAAACUUUGGGGCUCUAUUAAAUGCAAAAUAUU--CCGCAAAUGCCUUGCGGACUUCAAAGUUGGCCCCCUCACAUCCCCC-------------------- ............((((......((((((.((((........)))).(--((((((.....)))))))..........)))))).)))).......-------------------- ( -21.80, z-score = -1.57, R) >droSim1.chr2R 4504821 92 - 19596830 CUGUGCGCCGAGUUGAGAGUUUGGAGCCACGCUAAAU-UGGUCUG------GCAAAUGCUUUUUGAACACCCCGGCCACGCCCAUCGCCCAUAGCCCCU---------------- ..(((.((((.(((((((((.....((((.(((....-.))).))------))....))))))..)))....)))))))....................---------------- ( -22.10, z-score = 0.84, R) >consensus CUUCGUAUCAAAGUGAAACUUUGGGGCUCUAUUAAAUGCAAACUAUUCUCCGCAAAUGCCUUGCGGACUUCAAAGUUGGCCCCCUCACCCACCACCCCC________________ ....((.((((((.....)))))).))...........(((.......(((((((.....)))))))........)))..................................... (-12.52 = -11.64 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:53 2011