| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,230,937 – 10,231,057 |
| Length | 120 |
| Max. P | 0.670510 |
| Location | 10,230,937 – 10,231,057 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.52 |
| Shannon entropy | 0.16658 |
| G+C content | 0.37115 |
| Mean single sequence MFE | -28.96 |
| Consensus MFE | -24.84 |
| Energy contribution | -25.78 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10230937 120 + 22422827 GCACAACAUGCACUUAAGGAAGUAAUUACUGUGCAUUUGCCGUGCAUUUCAUGAAUUUUCGAGCAACUGAAAAUCAAAAUAACUUCCUGUUAAUGCGCAACUGGCGCAUUAAAUUUGCAU .......(((((....(((((((.(((...((((((.....))))))....(((.((((((......))))))))).))).))))))).(((((((((.....)))))))))...))))) ( -34.30, z-score = -3.03, R) >droEre2.scaffold_4690 13850556 117 - 18748788 --GCAACAUGCACUUAAGGAUGUAAUUACUGUGCAUUUGCCAUGCAUUUCAUGAAUUUUUGAGCAACUGAAA-UCAAAAUAGCUGCCUCCUAAGACGCAACUGGCGAAUUAAAUUUGCAU --((((..(((((.(((........)))..)))))((((((((((...(((........)))(((.(((...-......))).)))..........)))..)))))))......)))).. ( -23.80, z-score = 0.06, R) >droYak2.chrX 18810828 108 + 21770863 --GCCACAUGCACUUAAGGAAGUAAUUACUGUGCAUUUGGCAUGCAUUUCAUGAAUUUUCGAGCAACUGAAA-UCAAAAUAGCUUCCUGUUAAUGC---------GCAUUAAAUUUGCAU --((((.((((((.(((........)))..)))))).))))..(((((...(((..(((((......)))))-))).(((((....))))))))))---------(((.......))).. ( -25.40, z-score = -0.94, R) >droSec1.super_15 933908 117 + 1954846 --GCAACAUGCACUUAAGGAAGUAAUUACUGUGCAAUUGCCGUGCAUUUCAUGAAUUUUCGAGCAACUGAAA-UCAAAAUAACUUCAUGUUAAUGCGCAACUGGCGCAUUAAAUUUGCAU --((((..(((((.(((........)))..))))).)))).(((((...((((((.(((((......)))))-..........))))))(((((((((.....)))))))))...))))) ( -29.00, z-score = -1.27, R) >droSim1.chrX_random 591552 117 + 5698898 --GCAACAUGCACUUAAGGAAGUAAUUACUGUGCAUUUGCCGUGCAUUUCAUGAAUUUUCGAGCAACUGAAA-UCAAAAUAACUUCCUGUUAAUGCGCAACUGGCGCAUUAAAUUUGCAU --.....(((((....(((((((.(((...((((((.....))))))....(((..(((((......)))))-))).))).))))))).(((((((((.....)))))))))...))))) ( -32.30, z-score = -2.48, R) >consensus __GCAACAUGCACUUAAGGAAGUAAUUACUGUGCAUUUGCCGUGCAUUUCAUGAAUUUUCGAGCAACUGAAA_UCAAAAUAACUUCCUGUUAAUGCGCAACUGGCGCAUUAAAUUUGCAU .......(((((....(((((((.(((...((((((.....))))))....(((...((((......))))..))).))).))))))).(((((((((.....)))))))))...))))) (-24.84 = -25.78 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:53 2011