| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,230,731 – 10,230,829 |
| Length | 98 |
| Max. P | 0.704372 |
| Location | 10,230,731 – 10,230,829 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 76.99 |
| Shannon entropy | 0.34886 |
| G+C content | 0.31199 |
| Mean single sequence MFE | -16.55 |
| Consensus MFE | -11.64 |
| Energy contribution | -11.83 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10230731 98 - 22422827 CCAAAGUUGCCGCAAGUAAUGUG---UUUUUCACAACUUCUC---GUAAUUUGCUUUUCGUAAUUAAAGUAUAUAUAUAUGCGCUCAGUUUCUACGUAUAUUAU ...(((((((...((((..((((---.....))))))))...---)))))))(((((........)))))......(((((((...........)))))))... ( -14.50, z-score = -0.68, R) >droSim1.chrX_random 591355 90 - 5698898 CCAAAGUUGCCGCAAGCAAUGUG---UUUUUUACAACUUCUC---GUAAUUUGCUUUUGGUAAUUAAAG--UAUAUAUGUAUUCUACGUACAUAUAUG------ ....((((((((.((((((((((---.....))))((.....---))...)))))).))))))))....--(((((((((((.....)))))))))))------ ( -23.00, z-score = -3.77, R) >droSec1.super_15 933715 86 - 1954846 CCAAAGUUGCCGCAAGCAAUGUG---UUUUUUACAACUUCUC---GUAAUUUGCUUUUUGUAAUUAAAG--UAUAUAUGUAUUCUACGUAUAUG---------- ....((((((...((((((((((---.....))))((.....---))...))))))...))))))....--((((((((((...))))))))))---------- ( -14.80, z-score = -1.46, R) >droYak2.chrX 18810602 88 - 21770863 CCAAAGUUGCCGUAAGUAAUGUGCUUUUUUUUACAACUUUUUUUGGUAAUUCGCUUUUGGUAAUUAAA----AUAUAUGUGCGCUCAGUAUG------------ ....((((((((.((((....((((...................))))....)))).))))))))...----......((((.....)))).------------ ( -13.91, z-score = -0.07, R) >consensus CCAAAGUUGCCGCAAGCAAUGUG___UUUUUUACAACUUCUC___GUAAUUUGCUUUUGGUAAUUAAAG__UAUAUAUGUACGCUAAGUAUAUA__________ ....((((((((.((((((((((........))))((........))...)))))).))))))))..........(((((((.....))))))).......... (-11.64 = -11.83 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:52 2011