| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,228,329 – 10,228,427 |
| Length | 98 |
| Max. P | 0.541949 |
| Location | 10,228,329 – 10,228,427 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 68.47 |
| Shannon entropy | 0.48472 |
| G+C content | 0.31728 |
| Mean single sequence MFE | -17.69 |
| Consensus MFE | -7.75 |
| Energy contribution | -7.88 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541949 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10228329 98 + 22422827 ----CAUUAUAAUAAUGAUAAC-------AACUACGUGAUAAUCUUCCAUAGAAGA-CUCCACCGGACUCUUUUAAGCUGUAAAAAGGAAGUAGACUAGUAGACUAUCUG ----............((((..-------..((((........(((((.(((((((-.(((...))).)))))))...(......)))))).......))))..)))).. ( -16.16, z-score = -0.46, R) >droSim1.chrX_random 589145 100 + 5698898 AUUUAAUUAUAAUAAUGACUACGUGAUACAACUACCUGAUAAUCUUCCAUAGAAGA-CUCCGCAAGAGUCUUUUAAGCUAUUAAAAGCAAGUAGUUUUCUG--------- ................((((((...........................(((((((-((.(....)))))))))).(((......)))..)))))).....--------- ( -20.40, z-score = -2.70, R) >droSec1.super_15 931275 93 + 1954846 AUUUAAUUAUAAUAAUGAUAAC-------AACUACGUGAUAAUCUUCCAUAGAAGA-CUCCGCAAGAGUCUUUUAAGCUAUUAAAAGCAUGUAGUUAUCUG--------- ................((((..-------.(((((((............(((((((-((.(....)))))))))).(((......))))))))))))))..--------- ( -22.50, z-score = -4.13, R) >droEre2.scaffold_4690 13848027 87 - 18748788 AUUUUAUUGUAAUAGUGAUAAC-------AAUUAGAUGAUAAUAGUCUAUAGAAGAGCCUCGCACGCGUCAUUUUAGUUACAAACAGCAGCUAA---------------- ......(((((((((((((...-------...(((((.......))))).......((.......))))))))...)))))))...........---------------- ( -11.70, z-score = 0.64, R) >consensus AUUUAAUUAUAAUAAUGAUAAC_______AACUACGUGAUAAUCUUCCAUAGAAGA_CUCCGCAAGAGUCUUUUAAGCUAUAAAAAGCAAGUAGUUUUCUG_________ ...............................((((..............(((((((.(((.....)))))))))).(((......)))..))))................ ( -7.75 = -7.88 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:48 2011