| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,206,697 – 10,206,790 |
| Length | 93 |
| Max. P | 0.978895 |
| Location | 10,206,697 – 10,206,790 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 66.56 |
| Shannon entropy | 0.57944 |
| G+C content | 0.38426 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -9.04 |
| Energy contribution | -7.97 |
| Covariance contribution | -1.07 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.86 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.978895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10206697 93 + 22422827 CGACUCACUUUGGCUAUAAUUAU--------GCGCCUGAGAUUGAAGGGUUAUAU-----CCUUCAAGAUUUUGAUA-UUUUUAUUUACUUCCUUAUGUAGUGAGCA-------- .(.((((((..((((((....))--------).)))((((.(((((((((...))-----)))))))((....((((-....))))....))))))...))))))).-------- ( -21.60, z-score = -2.12, R) >droSim1.chrX_random 2896875 101 + 5698898 CACCUCACUUUGGCUAUAAUUAU--------GCGCCCGAGAUUGAAGGGUUAUAU-----CCUUCAAGAUUUGGGUA-UUUUUAUUUACUACUUUAUGUAGUGCCAUUGUGAACA ....((((..((((.........--------..(((((((.(((((((((...))-----)))))))..))))))).-.........(((((.....)))))))))..))))... ( -35.80, z-score = -5.71, R) >droSec1.super_15 908155 101 + 1954846 CACCUCACUUUGGCUAUAAUUAU--------GCGCCCGAGAUUGAAGGGUUAUAU-----CCUUCAAGAUUUGGGUA-UUUUUAUUUACUACUUUGUGUAGUGCCAUUGUGAACA ....((((..((((.........--------..(((((((.(((((((((...))-----)))))))..))))))).-.........(((((.....)))))))))..))))... ( -35.80, z-score = -5.40, R) >droYak2.chrX 18780436 101 + 21770863 CGCCUUACUUUGGCCAUAAUUAU--------GCGCCCGAGAUUGAAGGGU-AUAU-----CCUUCAAGAUUUUGAUACUUUUUAUUUCCCUCUGUAUGUAGUGCCAUUAUGAACA .(((.......)))((((((...--------((((.(((((((((((((.-...)-----))))))..))))))((((...............))))...)))).)))))).... ( -22.66, z-score = -1.87, R) >droEre2.scaffold_4690 13826136 100 - 18748788 CGCCAUACUUUGGCUAUAAUUAU--------GCGCCUGAGAUUGAAGGGC-AGAU-----CCUUCAAGAUUUGGGUA-UUUCUAUUUACUACUCUAUGUAGUGCACUUAUGAACA .((((.....))))(((((...(--------(((((..((.((((((((.-...)-----)))))))..))..))).-.........(((((.....)))))))).))))).... ( -29.20, z-score = -2.96, R) >dp4.chrXL_group1e 8888868 105 + 12523060 AGCUCUACUGCAGCGAUAAUUAUAAAUCUGAGAAUCUGAGAUUGAAGGGCAGUAGAGCUGCCUUUCGCCUCCUAAUG--AUUUAUUUAAGCUCUUCUUUCGCAGUCU-------- ......((((((((.......(((((((..((.....(((..((((((((((.....)))))))))).)))))...)--))))))....)))........)))))..-------- ( -27.90, z-score = -0.70, R) >droPer1.super_22 365329 103 - 1688296 AGCUCUACUGCAGCGAUAAUUAUAAAUCUGAGAAUCUGAGAUUGAAGGGCAGUAG--CUGCCUUUCGCCUCCUAAUG--AUUUAUUUACGCUUUUCUCUCGCAGUCU-------- ......(((((((((.(((..(((((((..((.....(((..((((((((((...--)))))))))).)))))...)--)))))))))))))........)))))..-------- ( -27.80, z-score = -1.30, R) >consensus CGCCUUACUUUGGCUAUAAUUAU________GCGCCUGAGAUUGAAGGGUUAUAU_____CCUUCAAGAUUUUGAUA_UUUUUAUUUACUACUUUAUGUAGUGCCCUU_UGAACA ............((((((...................((..(((((((............)))))))..))..((((.....))))..........))))))............. ( -9.04 = -7.97 + -1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:47 2011