| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,200,965 – 10,201,074 |
| Length | 109 |
| Max. P | 0.745712 |
| Location | 10,200,965 – 10,201,074 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 70.95 |
| Shannon entropy | 0.55485 |
| G+C content | 0.41720 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -9.19 |
| Energy contribution | -9.39 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.745712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10200965 109 + 22422827 AAAAGCGAAAACCGGUUUGGGAUAAACGACC---CAAAAUCGGUUAGAACUAGUGCCAACUAGUUUCGAGCCAUAAGCGAAAGCCAU---UAAAUCACAGUGUUAUAGAAAACUA ....((...((((((((((((........))---).))))))))).((((((((....))))))))...)).....((....))...---......................... ( -27.90, z-score = -3.09, R) >droAna3.scaffold_13248 1308984 111 - 4840945 GAAAAUGGAAACCGGCUCGCGAGUGGGAUUCGGUUAGAGCUAGUUCGUACUAGUACUA-CUA-UAAACAGCUCUAACUAAGGGCUGUGGGUUAAACCCCCCAUCCUAGGGGAU-- .......(((.((.(((....))).)).)))((((((.((((((....)))))).))(-((.-...((((((((.....)))))))).)))..))))((((......))))..-- ( -38.00, z-score = -1.79, R) >droEre2.scaffold_4690 13820730 108 - 18748788 AAAAGCGCAAACCGGCUUAAGAAACACGCCC---CAAA-UCGGUGGAAACUAGUGCCAACUAGUUUCUAGCCAUAAACGAAAGCCAU---UAAAUCACACAGUUAUAGAAAAGUA .............(((((..(.....((((.---....-..))))(((((((((....)))))))))..........)..)))))..---......................... ( -22.80, z-score = -2.14, R) >droYak2.chrX 18774402 95 + 21770863 AAAAGCGAAAACCGGCUUUAGGAAAACGGCC---CAAA-UCGGUUAGAACUAGUGCCAACUAGUUUCGA-------------GCCAU---UAAAUCACACAGUUAUAGAAAAGUA .(((((........))))).((........)---)...-..((((.((((((((....))))))))..)-------------)))..---......................... ( -18.10, z-score = -0.74, R) >droSec1.super_15 902451 108 + 1954846 AAAAGCGAAAACCGGUUGGGUAUAAGCGGCC---CAAA-UCGGUUAGAACUAGUGCCAACUAGUUUCGAAUCAUAAGCGAAAGCCAU---UAAAUCACAGUGUUAUAGAAAAGUG ...(((((.((((((((((((.......)))---).))-)))))).((((((((....))))))))....))....((....))...---...........)))........... ( -28.10, z-score = -2.73, R) >droSim1.chrX_random 2890592 108 + 5698898 AAAAGCGAAAACCGGUUGGGUAUAAGCGGCC---CAAA-UCGGUUAGAACUAGUGCCAACUAGUUUCGAGUCAUAAACGAAAGCCAU---UAAAUCACAGUGUUAUAGAAAAGUG ...((((..((((((((((((.......)))---).))-)))))).((((((((....)))))))).((........(....)....---....))....))))........... ( -24.89, z-score = -1.71, R) >consensus AAAAGCGAAAACCGGCUUGGGAUAAACGGCC___CAAA_UCGGUUAGAACUAGUGCCAACUAGUUUCGAGCCAUAAACGAAAGCCAU___UAAAUCACACUGUUAUAGAAAAGUA ....((...((((((........................)))))).((((((((....))))))))................))............................... ( -9.19 = -9.39 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:46 2011