Locus 13946

Sequence ID dm3.chrX
Location 10,186,694 – 10,186,786
Length 92
Max. P 0.707711
window19185

overview

Window 5

Location 10,186,694 – 10,186,786
Length 92
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 91.52
Shannon entropy 0.11600
G+C content 0.39627
Mean single sequence MFE -23.90
Consensus MFE -21.55
Energy contribution -21.33
Covariance contribution -0.21
Combinations/Pair 1.15
Mean z-score -1.51
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.47
SVM RNA-class probability 0.707711
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 10186694 92 + 22422827
GUCCUUUGUCUUGGCAUUUUCAUAACAAUAACUUAUUUGGCCAUAAGCCCCACUAAGUAAGUUACUAACUGUGUAAGUAAGUGAGAGAGUGC---
.............((((((((..........((((((((((.....))).....)))))))(((((.(((.....))).)))))))))))))--- ( -20.50, z-score =  -1.08, R)
>droYak2.chrX 18760097 95 + 21770863
GUCCUUUGUCCUGGCAUUUUCAUAACAAUAACUUAUUGGGCCAUAAGACCCACUAAGUAAGUUACUAACUGGGUAAGUAAGUGAGGGAAAGUGCG
.............((((((((.........(((((.((((........)))).)))))...(((((.(((.....))).)))))..)))))))). ( -25.50, z-score =  -1.36, R)
>droEre2.scaffold_4690 13807489 93 - 18748788
GUCCUUUGUCUUGGCAUUUUCAUAACAAUAACUUAUUGGGCCAUAAGCCCCACUAAGUAAGUUACUAACUGGGUAAGUAAGUAAGAGAGUGCG--
.............((((((((.........(((((.((((.(....).)))).)))))...(((((.(((.....))).))))))))))))).-- ( -25.70, z-score =  -2.08, R)
>consensus
GUCCUUUGUCUUGGCAUUUUCAUAACAAUAACUUAUUGGGCCAUAAGCCCCACUAAGUAAGUUACUAACUGGGUAAGUAAGUGAGAGAGUGCG__
.............((((((((.........(((((.((((.(....).)))).)))))...(((((.(((.....))).)))))))))))))... (-21.55 = -21.33 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:45 2011