| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,177,852 – 10,177,966 |
| Length | 114 |
| Max. P | 0.507116 |
| Location | 10,177,852 – 10,177,966 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.32 |
| Shannon entropy | 0.11577 |
| G+C content | 0.41905 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -26.24 |
| Energy contribution | -27.04 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.507116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10177852 114 - 22422827 GGUCAUCAGAUGGAUGAAAAGACCAAAUGACAAAUACAAACACUAGUGCAACACGCUGACACUAACCCAGUUUUGUUGUUUGUGUUGCUAUUCGUCCUCCAAUCGGAUCAGUGU------ ((((.......(((((((..(((((((..(((((.((......(((((((......)).))))).....)))))))..)))).)))....)))))))........)))).....------ ( -29.36, z-score = -1.20, R) >droSim1.chrX_random 552071 112 - 5698898 GGUCAUCAGUUGGAUGAAAAGACCAAAUGACAAAAACAAACACUAGUGCA--ACGCUGACACUAACCCAGUUUUGUUGUUUGUGUUGCUAUUCGUCCUCCAAUCGGAUCAGUGU------ ((((.......(((((((..(((((((..((((((........(((((((--....)).)))))......))))))..)))).)))....)))))))........)))).....------ ( -30.40, z-score = -1.73, R) >droSec1.super_15 880645 112 - 1954846 GGUCAUCAGUUGGAUGAAAAGACCAAAUGACAAAAACAAACACUAGUGCA--ACGCUGACACUAACCCAGUUUUGUUGUUUGUGUUGCUAUUCGUCCUCCAAUCGGAUCAGUGU------ ((((.......(((((((..(((((((..((((((........(((((((--....)).)))))......))))))..)))).)))....)))))))........)))).....------ ( -30.40, z-score = -1.73, R) >droYak2.chrX 18751116 118 - 21770863 GGUCAUCAGCUGGAUGAAAAGAGCAAAUGACAAAAACAAACACUACUGCA--ACGCUGACACUAACCCAGUUUUGUUGUUUGUGUUGCUAUUCGUCCUCGAAUCGGAUCAGUAUGUAUGU ((((.......(((((((...(((((.........(((((((.....(((--(.((((.........)))).))))))))))).))))).)))))))........))))........... ( -28.96, z-score = -0.81, R) >droEre2.scaffold_4690 13797704 112 + 18748788 GGUCAUCAGUUGGCUGAAAAGACCAAAUGACAAAAACAAACACUAGUGCA--AUGCUGACACUAACCCAGUUUUGUUGUUUGUGUUGUCAUUCGUCCUCGAAUCGGAUCAGUGU------ ((((.((((....))))...)))).((((((((..(((((((.....(((--(.((((.........)))).))))))))))).)))))))).((((.......))))......------ ( -31.30, z-score = -1.72, R) >consensus GGUCAUCAGUUGGAUGAAAAGACCAAAUGACAAAAACAAACACUAGUGCA__ACGCUGACACUAACCCAGUUUUGUUGUUUGUGUUGCUAUUCGUCCUCCAAUCGGAUCAGUGU______ ((((.......(((((((..(((((((..((((((........(((((((......)).)))))......))))))..)))).)))....)))))))........))))........... (-26.24 = -27.04 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:45 2011