| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,147,592 – 10,147,705 |
| Length | 113 |
| Max. P | 0.602952 |
| Location | 10,147,592 – 10,147,705 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 91.68 |
| Shannon entropy | 0.14877 |
| G+C content | 0.37522 |
| Mean single sequence MFE | -20.54 |
| Consensus MFE | -16.96 |
| Energy contribution | -17.68 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10147592 113 + 22422827 AAAUCGAACCAUAAAAUCGGUUUAAUAGAGUGAUACCCUUAUCGCCUUAUUUACUGCCUUUCCACGCUGACAAUCCCGUCAAUGAACCAUAUUCAGUUAAAUUUCAUAGGAAU ..................(((..(((((.((((((....)))))).)))))....))).((((....((((......))))(((((...((......))...))))).)))). ( -18.40, z-score = -1.30, R) >droSec1.super_15 859312 113 + 1954846 AAAUCGAGCCAUAAAAACGGUUUAAUAGAGUGAUACCCUUAUCGCUUUAUUUACUGCCUUUCCACGCCGACAAUCCCGUCAAUGGACCAUAUUCAGUUAAAUUUCAUAGGAAU .....(..((((......(((..((((((((((((....))))))))))))....)))..........(((......))).))))..)......................... ( -22.20, z-score = -1.77, R) >droYak2.chrX 18728862 113 + 21770863 AAAACGACCCACAAAAUCGGUUUAAUAGAGUGCUACCCUUAUCGGUUUAUUUACUGCCUUUCCACGCUGCCAAUCCAGUCAAUGAACCAUAUUCAGUUCAAUCUCAUAGGAAC ..................(((..((((((.((.((....)).)).))))))....))).((((..((((......))))...(((((........)))))........)))). ( -15.70, z-score = 0.27, R) >droEre2.scaffold_4690 13775184 113 - 18748788 AAACCGACCCACAAAAUCGGUUUAAUAGAGUGAUACUCUUAUCGGUUUAUUUACUGCCUUUCCACGCUGGCAAUUUAGUCAAUGAACCAUAUUCACUUAAAUUUCAUAGGAAU (((((((.........)))))))....((((((......(((.((((((((.((((..((.((.....)).))..)))).))))))))))).))))))............... ( -24.00, z-score = -2.50, R) >droSim1.chrX_random 528183 113 + 5698898 AAAUCCAGCCAUAAAAUCGGUUUAAUAGAGUGAUACCCUUAUCGCUUUAUUUACUGCCUUUCCACGCCGACAAUCCCGUCAAUGAACCAUAUUCAGUUAAAUUUCAUAGGAAU ..................(((..((((((((((((....))))))))))))....))).((((.....(((......))).(((((...((......))...))))).)))). ( -22.40, z-score = -3.00, R) >consensus AAAUCGACCCAUAAAAUCGGUUUAAUAGAGUGAUACCCUUAUCGCUUUAUUUACUGCCUUUCCACGCUGACAAUCCCGUCAAUGAACCAUAUUCAGUUAAAUUUCAUAGGAAU ..................(((..((((((((((((....))))))))))))....))).((((.....(((......)))..((((.....)))).............)))). (-16.96 = -17.68 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:40 2011