| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,106,581 – 10,106,676 |
| Length | 95 |
| Max. P | 0.526465 |
| Location | 10,106,581 – 10,106,676 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 88.15 |
| Shannon entropy | 0.16261 |
| G+C content | 0.32862 |
| Mean single sequence MFE | -18.25 |
| Consensus MFE | -16.77 |
| Energy contribution | -17.00 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10106581 95 - 22422827 -AUGAAAUUUCCUUUAUUAGAUUAAGACUUUGAUUAAUAACGGUGUGUUUACAUGGCAUAACCAUGCGACCAUUUAUACUGUUAUGAAUCUGGUGU -.............(((((((((.............(((((((((((.(..(((((.....)))))..).....))))))))))).))))))))). ( -20.54, z-score = -1.76, R) >droSec1.super_15 817172 95 - 1954846 -AUAAAAUGUAACUGAUAAGAUUAAGACUUUGAUUAAUUACGGUGUGAUUACAUGGCCAAACCAUGCGACCAUUUCUACUGUAAUGAAUAUGGUGU -.........................(((...(((.(((((((((((.(..(((((.....)))))..).)))....)))))))).)))..))).. ( -17.30, z-score = -0.77, R) >droSim1.chrX_random 485610 96 - 5698898 AAUAAAAUUUACCUGAUAAGAUAAAGACUUUGAUUAAUUACGGUGUGAUUACAUGGCCAAACCAUGCGACCAUUUCUGCUGUUAUGAAUCUGGUGU .......((((.((....)).)))).(((..((((....((((((((.(..(((((.....)))))..).)))....)))))....)))).))).. ( -16.90, z-score = -0.58, R) >consensus _AUAAAAUUUACCUGAUAAGAUUAAGACUUUGAUUAAUUACGGUGUGAUUACAUGGCCAAACCAUGCGACCAUUUCUACUGUUAUGAAUCUGGUGU ..........................(((..((((.(((((((((((.(..(((((.....)))))..).)))....)))))))).)))).))).. (-16.77 = -17.00 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:34 2011