| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,094,954 – 10,095,055 |
| Length | 101 |
| Max. P | 0.552415 |
| Location | 10,094,954 – 10,095,055 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 93.77 |
| Shannon entropy | 0.08756 |
| G+C content | 0.42438 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -18.65 |
| Energy contribution | -18.43 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10094954 101 - 22422827 UUCACAUAGUGACGAAGCGCACCAGAAGAGUGUGUGAAAAA-ACGCAUCGAUUGACACCUCAUUUGUUAAAAUCCAAUGCUCCUCACCACGGAAAAAGUGAU .((((...((......(((((((....).))))))......-))((((.((((((((.......)))))..)))..))))(((.......)))....)))). ( -19.50, z-score = -0.38, R) >droSec1.super_15 805114 101 - 1954846 UUCACAUAGUGACGAAGCGCACCAGAAGAGUGUGUGAAAAA-ACGCAUCGAUUGACAUCUCAUUUGUCAAAAUCCCAUGCUCCCCACCACUCAAAAAGUGAU .((((...(((......))).......(((((.(((.....-..((((.((((((((.......)))))..)))..))))....)))))))).....)))). ( -23.40, z-score = -2.36, R) >droSim1.chrX_random 473021 102 - 5698898 UUCACAUAGUGACGAAGCGCACCAGAAGAGUGUGUGAAAAAGAAGCAUCGAUUGACAUCUCAUUUGUCAAAAUCCCAUGCUCCCCACCAUUAAAAAAGUGAU .((((.(((((.....(((((((....).))))))........(((((.((((((((.......)))))..)))..)))))......))))).....)))). ( -20.10, z-score = -1.64, R) >consensus UUCACAUAGUGACGAAGCGCACCAGAAGAGUGUGUGAAAAA_ACGCAUCGAUUGACAUCUCAUUUGUCAAAAUCCCAUGCUCCCCACCACUAAAAAAGUGAU .((((...........(((((((....).)))))).........((((.((((((((.......)))))..)))..)))).................)))). (-18.65 = -18.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:33 2011