| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,094,726 – 10,094,779 |
| Length | 53 |
| Max. P | 0.829165 |
| Location | 10,094,726 – 10,094,779 |
|---|---|
| Length | 53 |
| Sequences | 9 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 90.74 |
| Shannon entropy | 0.19017 |
| G+C content | 0.43664 |
| Mean single sequence MFE | -17.06 |
| Consensus MFE | -12.50 |
| Energy contribution | -12.83 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10094726 53 + 22422827 UCGGUGAUUUGUUGGCCCAUAAUAAAUCA-GGGCAUAAACGGCUUAUGGCCAAA ....((((((((((.....))))))))))-((.(((((.....))))).))... ( -15.10, z-score = -1.40, R) >droSim1.chrX_random 472819 53 + 5698898 UCGGUGAUUUGUUGGCCCAUAAUAAAUCA-GGGCAUAAACGGCUUAUGGCCGAA (((((.((..((((((((...........-)))).....))))..)).))))). ( -17.40, z-score = -2.12, R) >droSec1.super_15 804913 53 + 1954846 UCGGUGAUUUGUUGGCCCAUAAUAAAUCA-GGGCAUAAACGGCUUAUGGCCGAA (((((.((..((((((((...........-)))).....))))..)).))))). ( -17.40, z-score = -2.12, R) >droYak2.chrX 18671281 53 + 21770863 UCGGUGAUUUGUUGGCCCAUAAUAAAUCA-GGGCAUAAACGGCUUAUUGCCGAA ((((..((..((((((((...........-)))).....))))..))..)))). ( -18.40, z-score = -2.78, R) >droEre2.scaffold_4690 13720834 53 - 18748788 UCGGUGAUUUGUUGGCCCAUAAUAAAUCA-GGGCAUAAACGGCUUAUUGCCGAA ((((..((..((((((((...........-)))).....))))..))..)))). ( -18.40, z-score = -2.78, R) >droAna3.scaffold_13047 897413 54 + 1816235 UUGGUGAUUUGUGGGGCCAUAAUAAAUCAAGGGCAUAAACGGCUUAUGGCCGCG (((((...(((((....)))))...)))))((.(((((.....))))).))... ( -14.90, z-score = -1.09, R) >droWil1.scaffold_180702 2250670 54 - 4511350 UUCCUGAUUUGUUGGCCCAUAAUAAAUCAAGGGCAUAAACGGCUUAUGGCCAAA .(((((((((((((.....))))))))).)))).......(((.....)))... ( -15.20, z-score = -1.58, R) >droVir3.scaffold_12970 6444651 54 - 11907090 UUGUUGAUUUGUUGCCCCGUAAUAAAUCAAGGGCAUAAACGGCUUAUGGCCGAA ...((((((((((((...))))))))))))((.(((((.....))))).))... ( -17.50, z-score = -2.42, R) >droMoj3.scaffold_6473 11894632 54 - 16943266 CUGUUGAUUUGUUGCUCCGUAAUAAAUCAAGAGCAUAAACGGCUUAUGGCCGAA ((.((((((((((((...)))))))))))).))......((((.....)))).. ( -19.20, z-score = -4.30, R) >consensus UCGGUGAUUUGUUGGCCCAUAAUAAAUCA_GGGCAUAAACGGCUUAUGGCCGAA ....((((((((((.....))))))))))..........((((.....)))).. (-12.50 = -12.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:32 2011