| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,094,388 – 10,094,504 |
| Length | 116 |
| Max. P | 0.752507 |
| Location | 10,094,388 – 10,094,504 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.73 |
| Shannon entropy | 0.41928 |
| G+C content | 0.60508 |
| Mean single sequence MFE | -40.17 |
| Consensus MFE | -25.99 |
| Energy contribution | -28.55 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.752507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10094388 116 - 22422827 GCACACCACAAAACAGUGGUGUGAGUGGUGUGAGGGAGGGGGGGGGGUGGGGGUUGGUGCCUCUGACCCCCCAGUGGCAACCAGGUGCCACUGAGGCU---GCGGCAAAAGUGAUGAUG .((((((((......)))))))).(..((.(.........((((((..((((((....))))))..))))))(((((((......))))))).).)).---.)................ ( -53.90, z-score = -2.15, R) >droYak2.chrX 18670961 100 - 21770863 ---------UAAAGAGGGGUGUGUGUG----------AGUGUGGGCAGGGGGGUGGGUGUGUCUGACCCCCCAGUGGCAAGCAGGUGCCACUGCAGCCUCAGUGGCAAAAGUGAUGAUG ---------..............(((.----------(.((.((((.(((((((.((.....)).)))))))(((((((......)))))))...)))))).).)))............ ( -41.40, z-score = -2.36, R) >droSec1.super_15 804605 89 - 1954846 GCACACCACAAAACAGUGGU------------------------GGAUGGG---UGGUGACUCUGACCCCCCAGUGGCAACCAGGUGCCGCUGAGGCU---GCGGCAAAAGUGAUGAUG (((((((((......)))))------------------------)...(((---((....)....))))((((((((((......)))))))).)).)---))................ ( -32.70, z-score = -0.52, R) >droSim1.chrX_random 472521 89 - 5698898 GCACACCACAAAACAGUGGU------------------------GGAUGGG---UGGUGACUCUGACCCCCCAGUGGCAACCAGGUGCCGCUGAGGCU---GCGGCAAAAGUGAUGAUG (((((((((......)))))------------------------)...(((---((....)....))))((((((((((......)))))))).)).)---))................ ( -32.70, z-score = -0.52, R) >consensus GCACACCACAAAACAGUGGU________________________GGAUGGG___UGGUGACUCUGACCCCCCAGUGGCAACCAGGUGCCACUGAGGCU___GCGGCAAAAGUGAUGAUG ....(((((......)))))............................(((((((((.....)))))))))((((((((......))))))))..(((.....)))............. (-25.99 = -28.55 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:31 2011