| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,092,436 – 10,092,537 |
| Length | 101 |
| Max. P | 0.517491 |
| Location | 10,092,436 – 10,092,537 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 74.33 |
| Shannon entropy | 0.41419 |
| G+C content | 0.52534 |
| Mean single sequence MFE | -24.18 |
| Consensus MFE | -14.91 |
| Energy contribution | -14.48 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10092436 101 + 22422827 CUGUUACUCUGCCACCA----CCAACCAACCCAGCUGCGGUUUCA-GUUCUCCGC-CAGUGGCGUCCAUGUGGUCCUCUCGGCAGAUUCGCCCCUGAAAAAAAAAAC .......((((((((((----(......(((((.((((((.....-.....))).-)))))).))....)))))......))))))..................... ( -24.20, z-score = -0.88, R) >droSim1.chrX_random 470607 103 + 5698898 CUGUUACUCUGCCACCAACCACCAACCAACCCAGCUGCGGUUUCA-AUUCUCCGC-CAGUGGCGUCCAUGUGGUCCUCUCGGCAGAUUCACCCCUGAAAAAAAAA-- .......((((((....(((((......(((((.((((((.....-.....))).-)))))).))....)))))......))))))((((....)))).......-- ( -25.50, z-score = -1.97, R) >droSec1.super_15 802740 103 + 1954846 CUGUUACUCUGCCACCAAGCACCAACCAACCCAGCUGCGGUUUCA-AUUCUCCGC-CAUUGGCGUCCAUGUGGUCCUCUCGGCAGAUUCACCCCUGAAAAAAAAA-- .......((((((....((.((((....((((((..((((.....-.....))))-..)))).)).....)))).))...))))))((((....)))).......-- ( -26.10, z-score = -2.09, R) >droAna3.scaffold_13047 895045 88 + 1816235 --------CUGUUACUGAUC-----CCUUCCAGGCUGCGGCUUUAUGUGCUUCGGACAACAGUGUCCGUGUGGUCCUUCCGGCAGAACAA-----GAAAAAUAAAU- --------.((((.(((...-----((....((((..((((.......))).((((((....)))))).)..).)))...))))))))).-----...........- ( -20.90, z-score = -0.07, R) >consensus CUGUUACUCUGCCACCAA_C_CCAACCAACCCAGCUGCGGUUUCA_AUUCUCCGC_CAGUGGCGUCCAUGUGGUCCUCUCGGCAGAUUCACCCCUGAAAAAAAAA__ .......((((((....................(((((((...........)))).....)))(.((....)).).....))))))..................... (-14.91 = -14.48 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:30 2011