| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,077,128 – 10,077,227 |
| Length | 99 |
| Max. P | 0.905025 |
| Location | 10,077,128 – 10,077,227 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.45 |
| Shannon entropy | 0.44159 |
| G+C content | 0.32175 |
| Mean single sequence MFE | -23.96 |
| Consensus MFE | -12.31 |
| Energy contribution | -13.15 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10077128 99 - 22422827 --------------UAUUUUUCCAUUAGCUUUAAUAA--AAUCUGUUUACCAUAUAAAGAGUAAAUUUAUUGUGCUGAAGAGCGAAGC----UUGGAUCCUUUGAAUCCUAUGCGGAAU --------------.....((((.(((((..((((((--(..((.((((.....)))).))....))))))).)))))........((----..((((.......))))...)))))). ( -19.40, z-score = -1.24, R) >droMoj3.scaffold_6473 5086839 119 - 16943266 UUCACUUUGACAAGUAAUAUGCAUUACAAUAAAUUAAUUAAUCAAUCCAUCAAAUAACGGCUUCAGUUUGUUGAAUGAGGCUCAAAGCGCUGUUGAUUUUAAUUAAUAGAAUGCGUAAU ...((((....))))..((((((((.(.((.((((((..(((((((............(((((((.((....)).))))))).........))))))))))))).)).))))))))).. ( -20.70, z-score = -0.40, R) >droEre2.scaffold_4690 13703457 99 + 18748788 --------------UAUUUUUCCAUUUACUUUAAUAA--AAUCUGCUUACCAUAUAAAGAGUAAAUUUAUUGUGGUGCAGAGCGGCGC----UCGGAUCCUUUGGAUCCUAUGCGCAAU --------------.......................--..(((((..((((((((((.......)))).)))))))))))...((((----..((((((...))))))...))))... ( -29.00, z-score = -3.45, R) >droYak2.chrX 18653223 99 - 21770863 --------------UAUUUUGCCAUUAACUUUAAUAA--AAUCUGUUUACCAUAUAAAGAGUAAAUUUAUUGUGGUGGAGAGCGGAGC----UUGGAUCCUUUGGAUCCUAUGCGCAAU --------------....((((...............--..(((((((.((((....(.((((....)))).).)))).)))))))((----..((((((...))))))...)))))). ( -26.90, z-score = -2.71, R) >droSec1.super_15 787840 99 - 1954846 --------------UAUUUUUCCAUUAGCUUUAAUAA--AAUCUGUUUACCAUAUAAAGAGUAAAAUUAUUGUGGUAAAGAGCGGAGC----UUGGAUCCUUUGGAUCCUAUGCAAAAU --------------......(((((((....))))..--...((.(((((((((................))))))))).)).)))((----..((((((...))))))...))..... ( -22.99, z-score = -2.16, R) >droSim1.chrX_random 2874638 99 - 5698898 --------------UAUUUUUCCAUUAGCUUUAAUAA--AAUCUGUUUACCAUAUAAAGAGUAAAUUUAUUGUGGUAAAGAGCGGAGC----UUGGAUCCUUUGGAUCCUAUGCGAAAU --------------....((((...............--..(((((((((((((((((.......)))).))))))))...)))))((----..((((((...))))))...)))))). ( -24.80, z-score = -2.60, R) >consensus ______________UAUUUUUCCAUUAACUUUAAUAA__AAUCUGUUUACCAUAUAAAGAGUAAAUUUAUUGUGGUGAAGAGCGGAGC____UUGGAUCCUUUGGAUCCUAUGCGAAAU ..........................................((.(((((((((((((.......)))).))))))))).))....((......(((((.....)))))...))..... (-12.31 = -13.15 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:30 2011