| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,802,851 – 10,802,943 |
| Length | 92 |
| Max. P | 0.714066 |
| Location | 10,802,851 – 10,802,943 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 79.37 |
| Shannon entropy | 0.43953 |
| G+C content | 0.35911 |
| Mean single sequence MFE | -17.72 |
| Consensus MFE | -10.05 |
| Energy contribution | -9.96 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.714066 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10802851 92 - 23011544 AUAUUUCAGGUUUAGACAUAUGUCAAUGGCAGAAACACAGGAAACUGAUAGAUAUUGCUUAGGAAAUGGAAAUGGAAAGGUUUAAUGGACAU ...(((((..(((((((....)))...(((((.....(((....))).......))))).......))))..)))))..(((.....))).. ( -15.40, z-score = -1.34, R) >droSim1.chr2L 10608879 92 - 22036055 AUAUUUCAGGUUUAGACAUAUGUCAAUGGCAGAAACACAGGAAACUGAUAGAUAUUGCUUAGGAAAUGGAAAUGGAAAGGUUUAAUGGACAU ...(((((..(((((((....)))...(((((.....(((....))).......))))).......))))..)))))..(((.....))).. ( -15.40, z-score = -1.34, R) >droSec1.super_3 6221071 86 - 7220098 AUAUUUCAGGUUUAGACAUAUGUCAAUGGCAGAAACACAGGAAACUGAUAGAUAUUGCUUAG------GAAAUGGAAAGGUUUAAUGGACAU .((((((.......(((....)))...(((((.....(((....))).......)))))...------)))))).....(((.....))).. ( -14.50, z-score = -1.26, R) >droYak2.chr2L 7209024 92 - 22324452 AUAUUUCAGGUUUAGACAUAUGUCAAUGGCAGAAACACAGGAAACUGAUAGAUAUUGCUUAGGAAAUGGAAAUGGAAAGGUUUAAUGGACUU ...(((((..(((((((....)))...(((((.....(((....))).......))))).......))))..)))))(((((.....))))) ( -16.20, z-score = -1.40, R) >droEre2.scaffold_4929 12013598 92 + 26641161 AUAUUUCAGGUUUAGACAUAUGUCAAUGGCAGAAACACAGGAAACUGAUAGAUAUUGCUUAGGAAAUUGAAAUGGAAAGGUUUAAUGGACGU .((((((((.((((..((.(((((..((.......))(((....)))...)))))))..))))...)))))))).....(((.....))).. ( -16.80, z-score = -1.65, R) >droAna3.scaffold_12916 14653188 88 - 16180835 AUAUUUCUGGCUUUGACAUAUGUCAUUGGCAGAGACACAGGAAACUGAAAGAUAUUGCAUAGGAAAUUGAAAUCAAAAGGCUUAAUGG---- ...((((((.(..((((....))))..).))))))..(((....)))..........((((((...(((....)))....))).))).---- ( -21.40, z-score = -2.87, R) >dp4.chr4_group4 3007508 87 - 6586962 AUAUUUCAGGGUUUGACAUCUGUCAAUAGCAGAAAUACAGGAAGCUGAGAGAUAUCGCUUAGGAAAUGGGGAU-CAAAAGUCCCAUGG---- .((((((.....(((((....))))).(((.......(((....))).((....)))))...))))))(((((-.....)))))....---- ( -20.40, z-score = -1.00, R) >droPer1.super_10 2022218 87 - 3432795 AUAUUUCAGGGUUUGACAUCUGUCAAUAGCAGAAAUACAGGAAGCUGAGAGAUAUCGCUUAGGAAAUGGGGAU-CAAAAGUCCCAUGG---- .((((((.....(((((....))))).(((.......(((....))).((....)))))...))))))(((((-.....)))))....---- ( -20.40, z-score = -1.00, R) >droWil1.scaffold_180703 358224 79 + 3946847 AUAAUUUAUGUUCUGGCAUGUGUCAUCGGCAG----ACAGGAAACUG--AAACAUUGAAU-GAACAUCAAAAUGCAUGAAGGACAU------ .......(((((((..(((((((.........----.(((....)))--.....((((..-.....)))).))))))).)))))))------ ( -19.00, z-score = -1.79, R) >consensus AUAUUUCAGGUUUAGACAUAUGUCAAUGGCAGAAACACAGGAAACUGAUAGAUAUUGCUUAGGAAAUGGAAAUGGAAAGGUUUAAUGGAC_U ..(((((.......(((....)))...(((((.....(((....))).......))))).........)))))................... (-10.05 = -9.96 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:02 2011