| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,071,470 – 10,071,588 |
| Length | 118 |
| Max. P | 0.886938 |
| Location | 10,071,470 – 10,071,588 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.50 |
| Shannon entropy | 0.25214 |
| G+C content | 0.48591 |
| Mean single sequence MFE | -22.48 |
| Consensus MFE | -18.94 |
| Energy contribution | -19.18 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.886938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10071470 118 + 22422827 UUCCUUAUAAGGACACACAUCCCACCAGCGACCCAACCACCCCCACACUCCACUUUUUCAUUUUGGCAGGCCUGCUUUGGCUAUAACUUUCCCAGACAGGCGAGGCUAAAACCGAAAC .((((....))))..........................................((((.(((((((..(((((.(((((..(.....)..))))))))))...)))))))..)))). ( -23.70, z-score = -1.51, R) >droSim1.chrX_random 456411 101 + 5698898 UUUCCUAUAAGGACACACAU-----------CCCA------CCCACACUCCACUCUUUCAUUUUGGCAGGCCUGCUUUGGCUAUAACUUUCCCAGACAGGCGAAGCCAAAACCGAAAC ..(((.....))).......-----------....------..............((((.(((((((..(((((.(((((..(.....)..))))))))))...)))))))..)))). ( -24.10, z-score = -3.08, R) >droYak2.chrX 18647100 100 + 21770863 UUCCUUAUGAGGACACCCAG------------CUA------CCCACACUCCAGUUUUUCAUUUUGGCAGGCCUGCUUUGGCUAUAACUUUCCCACACAGACGAGGCCAGAACCGUAAC ....(((((.((....))..------------...------...................(((((((.((((......))))....(((((.......)).)))))))))).))))). ( -17.40, z-score = 0.64, R) >droEre2.scaffold_4690 13697578 102 - 18748788 UUUCCUAUGAGGACACAUACU---------ACCCA------CCCACACUGCAGUUUUUCAUUUUGGCAGGCCUGAUUUGGCUAUAACUUUCCCAGACAGGCGAAGCCAAA-CCGAAAC ..(((.....)))........---------.....------..............((((..((((((..(((((.(((((..(.....)..))))))))))...))))))-..)))). ( -23.70, z-score = -1.99, R) >droSec1.super_15 782198 101 + 1954846 UUUCUUAUAAGGACACACAU-----------CCCA------CCCAAACUCCACUCUUUCAUUUUGGCAGGCCUGCUUUGGCUAUAACUUUCCCAGACAGGCGAAGCCAAAACCGAAAC ..........(((......)-----------))..------..............((((.(((((((..(((((.(((((..(.....)..))))))))))...)))))))..)))). ( -23.50, z-score = -2.71, R) >consensus UUUCUUAUAAGGACACACAU___________CCCA______CCCACACUCCACUUUUUCAUUUUGGCAGGCCUGCUUUGGCUAUAACUUUCCCAGACAGGCGAAGCCAAAACCGAAAC .(((......)))..........................................((((.(((((((..(((((.(((((..(.....)..))))))))))...)))))))..)))). (-18.94 = -19.18 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:26 2011