| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,064,020 – 10,064,109 |
| Length | 89 |
| Max. P | 0.571773 |
| Location | 10,064,020 – 10,064,109 |
|---|---|
| Length | 89 |
| Sequences | 5 |
| Columns | 89 |
| Reading direction | reverse |
| Mean pairwise identity | 94.87 |
| Shannon entropy | 0.08869 |
| G+C content | 0.49893 |
| Mean single sequence MFE | -26.72 |
| Consensus MFE | -24.94 |
| Energy contribution | -24.14 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10064020 89 - 22422827 CAACAAUAAUCACAGGCAGCGGCGUUGCCAGCCGCGAUUUGUAUGCAGCAAAUUGCCAACGUCCAAGCGUUGAGUUUUUGAGUAGGAUU ..............((((((...))))))..(((((((((((.....)))))))))((((((....))))))............))... ( -25.70, z-score = -1.15, R) >droEre2.scaffold_4690 13690426 87 + 18748788 CAACAAUAAUCACAGGCAACGGCGUUGCCAGUUGCGAUUUGUAUGCAGCAAAUUGCCGACGUCCAAGCGUUGAG--UUUGAGUAGGGUU .(((..((.(((..((((((...))))))....(((((((((.....)))))))))((((((....))))))..--..))).))..))) ( -25.60, z-score = -1.08, R) >droYak2.chrX 18638961 87 - 21770863 CAGCAAUAAUCACAGGCAACGGCGUUGCCAGUCGCGAUUUGUAUGCAGCAAAUUGCCAACGUCCAAGCGUUGAG--UUUGAGUAGGGUU .(((..((.(((..((((((...))))))....(((((((((.....)))))))))((((((....))))))..--..))).))..))) ( -26.20, z-score = -1.29, R) >droSec1.super_15 775277 87 - 1954846 CACCAAUAAUCACAGGCAACGGCGUUGCCAGCCGCGAUUUGUAUGCAGCAAAUUGCCAACGUCCAAGCGUUGAG--UUUGAGCAGGGUU .(((..........((((((...)))))).((((((((((((.....)))))))))((((((....))))))..--...).))..))). ( -28.20, z-score = -1.47, R) >droSim1.chrX_random 449366 87 - 5698898 CAACAAUAAUCACAGGCAGCGGCGUUGCCAGCCGCGAUUUGUAUGCAGCAAAUUGCCAACGUCCAAGCGUUGAG--UUUGAGCAGGGUU .......((((...(((.(((((.......)))))(((((((.....))))))))))...(..(((((.....)--))))..)..)))) ( -27.90, z-score = -1.14, R) >consensus CAACAAUAAUCACAGGCAACGGCGUUGCCAGCCGCGAUUUGUAUGCAGCAAAUUGCCAACGUCCAAGCGUUGAG__UUUGAGUAGGGUU ..............((((((...))))))..(((((((((((.....)))))))))((((((....))))))............))... (-24.94 = -24.14 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:24 2011