| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,041,386 – 10,041,496 |
| Length | 110 |
| Max. P | 0.592495 |
| Location | 10,041,386 – 10,041,496 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 83.17 |
| Shannon entropy | 0.28205 |
| G+C content | 0.48280 |
| Mean single sequence MFE | -34.85 |
| Consensus MFE | -22.95 |
| Energy contribution | -23.59 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.592495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10041386 110 + 22422827 -UAAUGACUACAAAGGAUAAUCCAGCGGGAGAAGCCUCCUGGCAAAAGGAAAAAAAAAUA--------CACCGCCUGGCUAAAUUCCGCCGGCAAAAAAGGAGGUGUCCUCCUGCGGGA -...................(((.(((((((..(((((((.......((...........--------..))(((.(((........)))))).....)))))))...))))))).))) ( -38.82, z-score = -2.89, R) >droEre2.scaffold_4690 13666651 105 - 18748788 -UAAUGACUAUAGAGGAUAAUAUGGCGAAAGAAGCCUCCGGGCAAGGGGGAAAAAAAAAA-----------CGCCUGGCUUAAUUCCGCAGCCAAAA--GGAGACGUCCUCCGCUGGGA -......(((..((((((.....((((.......(((((......)))))..........-----------))))(((((.........)))))...--(....)))))))...))).. ( -29.53, z-score = -0.40, R) >droYak2.chrX 18614971 109 + 21770863 AUAAUGACUAUAAAGAAUAAUACGGCGAGAGAAGCCUCCUGGCAAAAGGAAAAUAAAAAA-------ACACCGCCAGGCUUAAUUCCGCAGCCAAAG---GAGGCGUCCUCCUAUGGGA ........................(((.((.((((((...(((.................-------.....)))))))))...)))))..(((.((---((((...)))))).))).. ( -28.05, z-score = -1.17, R) >droSec1.super_15 752633 116 + 1954846 -UAAUGACUGCAAAGGAUAAUCCGGCGGGAGAAGCCUCCUGGCAAAAGGAAAAGAAAAAAAAAAGAAACACCGCCUGGCUAAAUUCCGCAGGCAAAA--GGAGGCGUCCUCCUGUGGGA -...................(((.(((((((..(((((((.......((.....................))(((((.(........))))))...)--))))))...))))))).))) ( -38.90, z-score = -2.28, R) >droSim1.chrX_random 442296 115 + 5698898 -UAAUGACUGCAAAGGAUAAUCCGGCGGGAGAAGCCUCCUGGCAAAAGGAAAAGAAAAAAAAAA-AAACACCGCCUGGCUAAAUUCCGCAGGCAAAA--GGAGGCGUCCUCCUGUGGGA -...................(((.(((((((..(((((((.......((...............-.....))(((((.(........))))))...)--))))))...))))))).))) ( -38.95, z-score = -2.41, R) >consensus _UAAUGACUACAAAGGAUAAUCCGGCGGGAGAAGCCUCCUGGCAAAAGGAAAAAAAAAAA_______ACACCGCCUGGCUAAAUUCCGCAGGCAAAA__GGAGGCGUCCUCCUGUGGGA .......(((((............((((((..((((....(((.............................))).))))...))))))..........((((.....))))))))).. (-22.95 = -23.59 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:22 2011