| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,025,947 – 10,026,059 |
| Length | 112 |
| Max. P | 0.630522 |
| Location | 10,025,947 – 10,026,059 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 60.86 |
| Shannon entropy | 0.68267 |
| G+C content | 0.35072 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -5.19 |
| Energy contribution | -5.08 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.64 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10025947 112 + 22422827 GUUUGAACAACGAGGACAUCGAGGACAGGCGAGAAAUUGUGGCCAUAAUGAAA---AUGGCUAGGAAAAUUAGUCAAAUAUAAUGGCAGUUGUUUGUUUGUUUGUUCUUUAAAGG----- .(((((....(((.....)))((((((((((((((((....(((((.(((...---.(((((((.....)))))))..))).)))))....)))).)))))))))))))))))..----- ( -29.30, z-score = -2.82, R) >droSim1.chrX_random 434075 88 + 5698898 ----------------GUUUGAGGACAGGCGAGAAAUUGUGGCCAUAAUGAAA---AUGGUUAGGCAAAUUAGUCAAAUAUAAUGGCAGUUGU--------UUGUUCUUUAAAGG----- ----------------....((((((((((((....((((((((((.......---))))))..))))....((((.......))))..))))--------))))))))......----- ( -21.30, z-score = -2.52, R) >droSec1.super_15 744667 88 + 1954846 ----------------GUUUGAGGACAGGCGAGAAAUUGUGACCAUAAUGAAA---AUGGUUAGGCAAAUUAGUCAAAUAUAAUGGCAGUUGU--------UUGUUCUUUAAAGG----- ----------------....((((((((((((....((((((((((.......---))))))..))))....((((.......))))..))))--------))))))))......----- ( -21.80, z-score = -3.03, R) >droYak2.chrX 18607035 101 + 21770863 GUUUGAUUAAC---UCAAUCGAAUACAGGCGAAAAAUUGUGGCCAUUACGCAA---AUGGUCAUGAAAAUUAGUCAAAUAUAAUGACAGUUGU--------UUGUUCUUUAAAGG----- ((((((((...---..))))))))((((((((....(..((((((((.....)---)))))))..)......((((.......))))..))))--------))))..........----- ( -25.10, z-score = -2.95, R) >droEre2.scaffold_4690 13658963 95 - 18748788 --------GUUUGAUAGUUCGAUCA-ACGCCAUUAAGGAACGCCAUAAUGAAA---AUGGUCAAGAGAAUUAGUCAAAUAUAAUGACAGUUGC--------UUGUUCUUUAAAGG----- --------..(((((......))))-)..((.((((((((((((((.......---)))))...(((((((.((((.......)))))))).)--------))))))))))).))----- ( -21.00, z-score = -1.96, R) >droGri2.scaffold_15203 4821950 112 + 11997470 AUUUAAACAAGUGGAGAACCUAAAACAAAAACAAAUUUGGGACAAUAAUUGUAUUUAUGGCUGGUGCUGCCAACAGCCUCAAGUUGCAAUAUA--------UUUGCCAUAAAAGGAAAGU ..........((((..((((((((...........))))))......(((((((((..(((((.((....)).)))))..))).))))))...--------))..))))........... ( -20.70, z-score = 0.16, R) >consensus ________AA______GAUCGAGGACAGGCGAGAAAUUGUGGCCAUAAUGAAA___AUGGUUAGGAAAAUUAGUCAAAUAUAAUGGCAGUUGU________UUGUUCUUUAAAGG_____ .......................................(((((((..........))))))).........((((.......))))................................. ( -5.19 = -5.08 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:21 2011