| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,007,266 – 10,007,366 |
| Length | 100 |
| Max. P | 0.650645 |
| Location | 10,007,266 – 10,007,366 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 62.56 |
| Shannon entropy | 0.58777 |
| G+C content | 0.29750 |
| Mean single sequence MFE | -19.05 |
| Consensus MFE | -7.71 |
| Energy contribution | -8.65 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10007266 100 - 22422827 AAGGCGUAAUAAGAC----UUUAAUACGCGAACUUAAAUGAAGCUUUAUUCUAGCAACAGUGUU-------UUAGACAUUAUCUGUAAAUGAUAAGUUUAUACGAGUUCAU ...(((((.(((...----.))).)))))((((((...((..(((.......)))..))..((.-------.(((((.(((((.......)))))))))).)))))))).. ( -21.80, z-score = -1.98, R) >droSec1.super_15 721739 106 - 1954846 -AGACGUAAAAAGAC----UUUAAUACGCGGACUUAAAUGAAGCUUUGUUCUAGCAACAGCGUUUUGAGACAUACAUAUUAUCUUGAAAUGAUAAGAUUAUAAGAGUUCAU -.(.((((.......----.....)))))((((((..((((.(((((((....)))).)))((((..(((...........)))..)))).......))))..)))))).. ( -17.60, z-score = -0.35, R) >droEre2.scaffold_4690 13641177 100 + 18748788 AAGGCGUAAUAAGAC----UUUAAUACGCGAAUUUAAAUGCAGCUUUGUUCUAGCAACAAAGUU-------GUAGACAUUAUCUUUAAAUGAUAAGAUUAUGAAAGUUCAU ...(((((.(((...----.))).)))))((((((...((((((((((((.....)))))))))-------)))..(((.(((((........))))).))).)))))).. ( -27.40, z-score = -4.04, R) >droGri2.scaffold_15203 7154546 97 + 11997470 AAAAUAUAUGGAGACCUUGUUUGAUCCCUUGAUCUUUUAAAUGAUCUUUUAUCACAAUA------------UUUGAAAUUA-CUCAACGCACCAAUUUAACAGAAAUCAG- ........(((......((((((((.....((((........))))....)))).))))------------.((((.....-.))))....)))................- ( -9.40, z-score = 0.43, R) >consensus AAGACGUAAUAAGAC____UUUAAUACGCGAACUUAAAUGAAGCUUUGUUCUAGCAACAG_GUU_______UUAGACAUUAUCUUUAAAUGAUAAGAUUAUAAAAGUUCAU ...(((((.((((......)))).)))))((((((.......(((.......))).................(((((.(((((.......))))))))))...)))))).. ( -7.71 = -8.65 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:16 2011