| Sequence ID | dm3.chrX |
|---|---|
| Location | 10,001,355 – 10,001,471 |
| Length | 116 |
| Max. P | 0.905084 |
| Location | 10,001,355 – 10,001,471 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 88.92 |
| Shannon entropy | 0.17656 |
| G+C content | 0.39059 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -22.83 |
| Energy contribution | -22.57 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.905084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 10001355 116 + 22422827 UCUUAAAAAUUUUCUUGGGAAAAUCGCGUGCCUCACGCGUGAAUAUCGAAUGAGUACACAACUUGCCAUCGAUUCAUUACGAUACCAAGUUGAAGUCGAGAAAAAAAGAAAACAAU .........(((((((((((.(.(((((((.....))))))).).))...........(((((((..((((........))))..)))))))...)))))))))............ ( -28.10, z-score = -2.59, R) >droEre2.scaffold_4690 13635266 116 - 18748788 UCUUAAACAUUUUCUUGGGAAAAUCGCGUGCCCCACGCGUGAAUAUCGAAUGAGUACACAACUUGCCAUCGAUUCAUUACGACUGAGAGUUAAAGUCAAGAAAAAAAUGAAACAAU .........(((((((((.......(((((...)))))((((..(((((.((.(((.......))))))))))...))))...............)))))))))............ ( -23.10, z-score = -1.07, R) >droYak2.chrX 18583510 115 + 21770863 UCUUUAAAAUUUCCUUGGGAAAAUCGCGUGCCUCACGCGUGAAUAUCGAACGAGUACACAACUCGCCAUCGAUUCAUUACGAUUCCAAGUUAAUGCCAUGAAAAAAAGAAA-CAAU (((((...(((..(((((((.....(((((...)))))((((..(((((.(((((.....)))))...)))))...))))..)))))))..)))....(....))))))..-.... ( -28.90, z-score = -3.15, R) >droSec1.super_15 710448 114 + 1954846 UCUUUAAAAUUUCCUUGCGAAAAUCGCGUGCCUCACGCGUGAGUAUCGAAUGAGUACACAACUCGCCAUCGAUUCAUUACGAUUCCAAGUUGAAGUCG-GGGAAAAAGAAA-CAAU ((((..(..((..((((.((..((((((((...)))))((((..(((((.(((((.....)))))...)))))...)))))))))))))..))..)..-))))........-.... ( -27.90, z-score = -1.24, R) >consensus UCUUAAAAAUUUCCUUGGGAAAAUCGCGUGCCUCACGCGUGAAUAUCGAAUGAGUACACAACUCGCCAUCGAUUCAUUACGAUUCCAAGUUAAAGUCAAGAAAAAAAGAAA_CAAU .........(((((((((.......(((((...)))))((((..(((((.(((((.....)))))...)))))...))))...............)))))))))............ (-22.83 = -22.57 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:13 2011