| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,988,744 – 9,988,839 |
| Length | 95 |
| Max. P | 0.998055 |
| Location | 9,988,744 – 9,988,839 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 97.19 |
| Shannon entropy | 0.03867 |
| G+C content | 0.33333 |
| Mean single sequence MFE | -27.60 |
| Consensus MFE | -27.05 |
| Energy contribution | -26.83 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -3.65 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.24 |
| SVM RNA-class probability | 0.998055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9988744 95 + 22422827 UCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUUGCCAUUUUAUUUGGCUUCAUUUGGCAACUAUUUG ..(((..(((((.((..((((((((..((((....))))..)))))))).((((.......)))).........)).)))))..)))........ ( -24.60, z-score = -2.99, R) >droEre2.scaffold_4690 13629504 95 - 18748788 UCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGCUUGUGGAUUGGCCUUUAUGGCCAUUUUAUUUGGCUUCAUUUGGCAACUAUUUG ..(((..(((((.((..((((((((..((((....))))..)))))))).(((((.....))))).........)).)))))..)))........ ( -31.10, z-score = -4.39, R) >droYak2.chrX 18578365 95 + 21770863 UCUGUCUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUGGCCAUUUUAUUUGGCUUCAUUUGGCAACUAUUUG ..((((.(((((.((..((((((((..((((....))))..)))))))).(((((.....))))).........)).))))).))))........ ( -27.10, z-score = -3.58, R) >consensus UCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUGGCCAUUUUAUUUGGCUUCAUUUGGCAACUAUUUG ..((((.(((((.((..((((((((..((((....))))..)))))))).(((((.....))))).........)).))))).))))........ (-27.05 = -26.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:13 2011