| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,980,382 – 9,980,489 |
| Length | 107 |
| Max. P | 0.909779 |
| Location | 9,980,382 – 9,980,489 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 75.51 |
| Shannon entropy | 0.43856 |
| G+C content | 0.49014 |
| Mean single sequence MFE | -31.98 |
| Consensus MFE | -15.46 |
| Energy contribution | -17.18 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.909779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9980382 107 - 22422827 GUGCGCACCCGGGACUCGCACCACAUCGAUCGUGGUGGGGUUCCGCGCUAAGUCAGCUAGUAUUUUAGCUAGUAUCUGGCUAGCUUACAGCACCUCCCGCUAAUCAA ((((.....((((((((.((((((.......)))))))))))))).((((.((((((((((......)))))...))))))))).....)))).............. ( -42.50, z-score = -3.35, R) >droEre2.scaffold_4690 13621315 107 + 18748788 GUACACACCCCGGACACAAACCACACAGAUCGUGGUUGGUUUCCGUGCUAAGCUAGCUAUUAUUUCAUUGGAAAUCUAGCUAGUUCCCAUCACUGCCUGGCUAUCAA .........(((((.((.((((((.......)))))).)).)))(((...(((((((((..(((((....))))).))))))))).....))).....))....... ( -29.10, z-score = -2.21, R) >droYak2.chrX 18569843 98 - 21770863 GUGCACACCCCAGACUCGCACCAUAGAGAUCGUGGUUGGUGUCCGCGCUAAAGCAACGAAUAUUUUAUCGAGAAUCUAGCUAGUAUUUAGCUCUGCAA--------- (((((((((((((((((........))).)).)))..)))))..))))....(((.(((........))).......((((((...)))))).)))..--------- ( -25.20, z-score = -1.00, R) >droSec1.super_15 696463 107 - 1954846 GUGCGCACCCGAGACUCGCACCACACCGAUCGUGGUGGGGCUCCGUGAUAAAAAAGCUAGUAUUUUUUCUAGUAUCUAGCUAGUUUUCAGCACUUCCCGCUAAUCAA ((((.(((..(((.(((.((((((.......)))))))))))).))).......((((((((((......)))).))))))........)))).............. ( -32.60, z-score = -2.66, R) >droSim1.chrX_random 414645 107 - 5698898 GUGCGCACCCGAGACUCGAACCACACCGAUCGUGGUGGGGCUCCGUGAUAAAUAAGCUAGUAUUUUUUCUAGUAUCUAGCUAGUUUUCAGCACUUCCCGCUAAUCAA ((((......(((.(((..(((((.......))))).))))))..(((.((((.((((((((((......)))).)))))).))))))))))).............. ( -30.50, z-score = -2.08, R) >consensus GUGCGCACCCGAGACUCGCACCACACCGAUCGUGGUGGGGCUCCGUGCUAAAUAAGCUAGUAUUUUAUCUAGUAUCUAGCUAGUUUUCAGCACUUCCCGCUAAUCAA ((((........((.((.((((((.......)))))).)).))......((((.((((((((((......)))).)))))).))))...)))).............. (-15.46 = -17.18 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:09 2011