| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,963,035 – 9,963,132 |
| Length | 97 |
| Max. P | 0.519313 |
| Location | 9,963,035 – 9,963,132 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 90.83 |
| Shannon entropy | 0.14676 |
| G+C content | 0.49866 |
| Mean single sequence MFE | -21.55 |
| Consensus MFE | -18.44 |
| Energy contribution | -18.50 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519313 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9963035 97 + 22422827 ACCAGGCGAUCUCCUUGGCUCGUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAACCUCCCCACCCCAAGCUCCCUCGAG ....(((((.((..(((((..........)))))..)).))))).....((.(((.......(((..((....))..)))......))).))..... ( -21.82, z-score = -0.96, R) >droSim1.chrX 7930674 95 + 17042790 ACCAGGCGAUCUCCUUGGCUCGUUAAUUUGGCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAAC--CCCCAUCCCAAACCCCCUCGAG ....(((.(......(((((.(..((((((((((.....))))))))))..)))))).....).)))......--...................... ( -25.40, z-score = -2.05, R) >droSec1.super_15 679215 95 + 1954846 ACCAAACGAUCUCCUUGGCUCGUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAAC--CCCCAUCCCAAACCCCCUCGAG ......(((.....(((((..........)))))...((((((((((.((.......)).))))))...))))--.................))).. ( -16.40, z-score = -0.90, R) >droYak2.chrX 18552565 96 + 21770863 ACCAGACGAUCUCCUUGGCUCGUUAAUUUGGCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAAACACA-CCAAACCGAAAAUCCCCUUGAG ......((.......(((((.(..((((((((((.....))))))))))..))))))...(((((.........-))))).)).............. ( -22.60, z-score = -1.74, R) >consensus ACCAGACGAUCUCCUUGGCUCGUUAAUUUGCCAAAAAGUUUGCCAAAUUGGUAGCCACACUUUGGCCAGAAAC__CCCCACCCCAAACCCCCUCGAG (((.(((((((.....)).)))))((((((((((.....))))))))))))).((((.....))))............................... (-18.44 = -18.50 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:06 2011