| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,960,040 – 9,960,159 |
| Length | 119 |
| Max. P | 0.937628 |
| Location | 9,960,040 – 9,960,159 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.70 |
| Shannon entropy | 0.16225 |
| G+C content | 0.46603 |
| Mean single sequence MFE | -26.30 |
| Consensus MFE | -24.84 |
| Energy contribution | -25.64 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937628 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9960040 119 + 22422827 AUUGUGUGUUGCAAUAUUUAUGACUCCCACAUGGAGUGCCGAUUGCAUUUCGUGUCACCAGCAAACGCCC-AAAAACCCACUUCAAGAUCCCUCAACGCACAAGCCAAACCAAACAACAA .((((((((((....((((.(((.....(((((((((((.....))))))))))).....((....))..-...........)))))))....))))))))))................. ( -27.00, z-score = -2.59, R) >droEre2.scaffold_4690 13601132 113 - 18748788 AUUGUGUGUUGCAAUAUUUAUGACUCCCACAGUGAGUGCCGAUUGCAUUUCGUGUCACCGGCGAAAGACC-AAAAGCCCACUUCAAGAUCCCUCCACACAUGAGCCAAAACAAA------ ..((((((.((((((.......((((.......))))....))))))....(((.....(((....).))-.......))).............))))))..............------ ( -19.00, z-score = 0.69, R) >droYak2.chrX 18549609 120 + 21770863 AUUGCGUGUUGCAAUAUUUAUGACUCCCACAGUGAGUGCCGAUUGCAAUUCCUGUCGCCGGCGAAAGCCCCAAAAACCCACUUCAAGAUCCCUCAACACAUGAGCCAAAGCAAACAACAA .((((((((((....((((.(((.....((((.((((((.....)).))))))))....(((....))).............)))))))....)))))).((...))..))))....... ( -24.50, z-score = -1.19, R) >droSec1.super_15 676230 119 + 1954846 AUUGUGUGUUGCAAUAUUUAUGACUCCCACAUGGAGUGCCGAUUGCAUUUCGUGUCACCGGCAAGCGCCC-AAAAACCCACUUCAAGAUCCCUCAACACACGAGCCAAACCAAACAACAA .((((((((((....((((.(((.....(((((((((((.....)))))))))))....(((....))).-...........)))))))....))))))))))................. ( -30.50, z-score = -2.79, R) >droSim1.chrX 7927480 119 + 17042790 AUUGUGUGUUGCAAUAUUUAUGACUCCCACAUGGAGUGCCGAUUGCAUUUCGUGUCACCGGCAAGCGCCC-AAAAACCCACUUCAAGAUCCCUCAACACACGAGCCAAACCAAACAACAA .((((((((((....((((.(((.....(((((((((((.....)))))))))))....(((....))).-...........)))))))....))))))))))................. ( -30.50, z-score = -2.79, R) >consensus AUUGUGUGUUGCAAUAUUUAUGACUCCCACAUGGAGUGCCGAUUGCAUUUCGUGUCACCGGCAAACGCCC_AAAAACCCACUUCAAGAUCCCUCAACACACGAGCCAAACCAAACAACAA .((((((((((....((((.(((.....(((((((((((.....)))))))))))....(((....))).............)))))))....))))))))))................. (-24.84 = -25.64 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:05 2011