| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,935,928 – 9,936,035 |
| Length | 107 |
| Max. P | 0.979618 |
| Location | 9,935,928 – 9,936,035 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 99.38 |
| Shannon entropy | 0.00858 |
| G+C content | 0.52648 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -29.72 |
| Energy contribution | -29.50 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.03 |
| SVM RNA-class probability | 0.979618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9935928 107 + 22422827 GAAGACCUUUUGUGCCGAAGACCCGACCAGUUUUGGAUAAGUCCAAGCCUGAGCAGGAAGAUGGUGCAGAAGAGAGUGAGGAGGAAGACGAGGAGGAGGAUUCCGAG ......((((((..(((....((.(..(((.((((((....)))))).)))..).))....)))..))))))..........((((..(........)..))))... ( -31.70, z-score = -2.56, R) >droSec1.super_15 652424 107 + 1954846 GAAGACCUUUUGUGCCGAAGACCCGACCAGUUUUGGAUAAGUCCAAGCCUGAGCAGGAAGAUGGUGCAGAAGAGAGUGAGGAAGAAGACGAGGAGGAGGAUUCCGAG ......((((((..(((....((.(..(((.((((((....)))))).)))..).))....)))..)))))).......((((.....(.....).....))))... ( -29.60, z-score = -2.24, R) >droSim1.chrX 7904649 107 + 17042790 GAAGACCUUUUGUGCCGAAGACCCGACCAGUUUUGGAUAAGUCCAAGCCUGAGCAGGAAGAUGGUGCAGAAGAGAGUGAGGAAGAAGACGAGGAGGAGGAUUCCGAG ......((((((..(((....((.(..(((.((((((....)))))).)))..).))....)))..)))))).......((((.....(.....).....))))... ( -29.60, z-score = -2.24, R) >consensus GAAGACCUUUUGUGCCGAAGACCCGACCAGUUUUGGAUAAGUCCAAGCCUGAGCAGGAAGAUGGUGCAGAAGAGAGUGAGGAAGAAGACGAGGAGGAGGAUUCCGAG ......((((((..(((....((.(..(((.((((((....)))))).)))..).))....)))..)))))).......((((.....(.....).....))))... (-29.72 = -29.50 + -0.22)
| Location | 9,935,928 – 9,936,035 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 99.38 |
| Shannon entropy | 0.00858 |
| G+C content | 0.52648 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -22.40 |
| Energy contribution | -22.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9935928 107 - 22422827 CUCGGAAUCCUCCUCCUCGUCUUCCUCCUCACUCUCUUCUGCACCAUCUUCCUGCUCAGGCUUGGACUUAUCCAAAACUGGUCGGGUCUUCGGCACAAAAGGUCUUC ...((((..(........)..)))).........((((.((..((.....((((..(((..(((((....)))))..)))..)))).....))..)).))))..... ( -23.60, z-score = -1.35, R) >droSec1.super_15 652424 107 - 1954846 CUCGGAAUCCUCCUCCUCGUCUUCUUCCUCACUCUCUUCUGCACCAUCUUCCUGCUCAGGCUUGGACUUAUCCAAAACUGGUCGGGUCUUCGGCACAAAAGGUCUUC ...(((....))).....................((((.((..((.....((((..(((..(((((....)))))..)))..)))).....))..)).))))..... ( -22.40, z-score = -1.00, R) >droSim1.chrX 7904649 107 - 17042790 CUCGGAAUCCUCCUCCUCGUCUUCUUCCUCACUCUCUUCUGCACCAUCUUCCUGCUCAGGCUUGGACUUAUCCAAAACUGGUCGGGUCUUCGGCACAAAAGGUCUUC ...(((....))).....................((((.((..((.....((((..(((..(((((....)))))..)))..)))).....))..)).))))..... ( -22.40, z-score = -1.00, R) >consensus CUCGGAAUCCUCCUCCUCGUCUUCUUCCUCACUCUCUUCUGCACCAUCUUCCUGCUCAGGCUUGGACUUAUCCAAAACUGGUCGGGUCUUCGGCACAAAAGGUCUUC ...(((....))).....................((((.((..((.....((((..(((..(((((....)))))..)))..)))).....))..)).))))..... (-22.40 = -22.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:05 2011