| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,800,876 – 10,800,976 |
| Length | 100 |
| Max. P | 0.959633 |
| Location | 10,800,876 – 10,800,976 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 91.68 |
| Shannon entropy | 0.13389 |
| G+C content | 0.32417 |
| Mean single sequence MFE | -16.55 |
| Consensus MFE | -16.55 |
| Energy contribution | -16.80 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.60 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10800876 100 - 23011544 GUGCAACUGUGUGCGGG--CGCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGUAAAAAAAAAUAUAUUCAGAAAAAAAACC-- ((((..((((((....)--)))))............(((....))).....))))....(((((.....)))))............................-- ( -15.00, z-score = -1.28, R) >droSim1.chr2L 10606986 101 - 22036055 GUGCAAUUGUGUGCGGGCGCGCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGU---AAAAUAUAUAUUCAGAAAAAAAAAAAC ((((...(((.((((....)))).))).........(((....))).....))))...........((((((..---...)))))).................. ( -17.10, z-score = -1.67, R) >droSec1.super_3 6219179 101 - 7220098 GUGCAACUGUGUGCGGGCGCGCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGU---AAAAUAUAUAUUCAGAGAAAAAAAAAC ((((..(((((((....)))))))............(((....))).....))))...........((((((..---...)))))).................. ( -18.80, z-score = -2.21, R) >droEre2.scaffold_4929 12011640 99 + 26641161 GUGCGACUGUGUGCGGG--CGCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGU---AAAAUAUAUAUUCGAAAAAAAAAGAAA ((((..((((((....)--)))))............(((....))).....))))...........((((((..---...)))))).................. ( -15.30, z-score = -1.24, R) >consensus GUGCAACUGUGUGCGGG__CGCAGACAUGAAGUGAAUAAGAAAUUGGAAAAGCACUAAAACAUAACAUAUAUGU___AAAAUAUAUAUUCAGAAAAAAAAAAAC ((((...(((.((((....)))).))).........(((....))).....))))...........((((((((......))))))))................ (-16.55 = -16.80 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:31:00 2011