| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,917,620 – 9,917,727 |
| Length | 107 |
| Max. P | 0.656621 |
| Location | 9,917,620 – 9,917,727 |
|---|---|
| Length | 107 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 78.30 |
| Shannon entropy | 0.40446 |
| G+C content | 0.51909 |
| Mean single sequence MFE | -37.96 |
| Consensus MFE | -24.28 |
| Energy contribution | -21.92 |
| Covariance contribution | -2.36 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9917620 107 - 22422827 AUGGUGCAAUUUUCCCCAUUAACGCAAAUUGCC-CGGCGAUAGAGAUUGGCAAGCGUGGA---GGGGGGAUGCCACUUUUGGCCAGAUGUUUGGCGAAAGUCAAAGCGGCU ..(.(((....((((((....((((...(((((-...(......)...)))))))))...---.)))))).((((....))))......((((((....))))))))).). ( -38.20, z-score = -1.11, R) >droEre2.scaffold_4690 13558710 106 + 18748788 AUGGUGCAAUUUUCCCCAUUAACGCAAAUUACC-UGGUGAUAGAGAUUGGCAAUGGUGG----AAUCCCCCUCCACUUUUGACCAGAUGUUUGGCGAAAGUUAAAGCGGCU ..(.((((((((((.(((..((((...(((((.-..))))).....(((((((.(((((----(.......)))))).))).)))).))))))).)))))))...))).). ( -26.30, z-score = 0.00, R) >droYak2.chrX 18507954 110 - 21770863 AUGCUGCAAUUUUCCCCAUUAACGCAAAUUGCC-CGGCGAUAGAGAUUGGCAAGUGUGGAGUGGGGGGGAUGCCACUUUUGGCCAGAUGUUUGGCGAAAGUCAAAGCGGCU ..(((((.(((..(((((((.((((...(((((-...(......)...)))))))))..)))))))..)))((((....))))......((((((....))))))))))). ( -47.10, z-score = -3.32, R) >droSec1.super_15 631917 107 - 1954846 AUGGUGCAAUUUUCCCCAUUAACGCAAAUUGCC-CGGCGAUAGAGAUUGGCAAGCGUGGA---AGGGGGAUGCCACUUUUGGCCAGAUGUUUGGCGAAAGUCAAAGCGGCU ..(.(((....((((((.((.((((...(((((-...(......)...))))))))).))---.)))))).((((....))))......((((((....))))))))).). ( -37.50, z-score = -1.11, R) >droSim1.chrX 7898427 107 - 17042790 AUGGUGCAAUUUUCCCCAUUAACGCAAAUUGCC-CGGCGAUAGAGAUUGGCAAGCGUGGU---GGGGGGAUGCCACUUUUGGCCAGAUGUUUGGCGAAAGUCAAAGCGGCU ..(.(((...(..((((((((.(((...(((((-...(......)...))))))))))))---))))..).((((....))))......((((((....))))))))).). ( -40.90, z-score = -1.70, R) >dp4.chrXL_group3a 1150403 108 - 2690836 AUGGUGCAAUUUUCCCCAUUAACUCGAAUGGCCAUCGUCAUCGCUAGAGGCGCCCCCAAG---GAGAGAUGCCUGGCUGUGGCCAGGUGUUUGGCGAAAGUCCAAGCCAAA .((((...((((((.((.....(((...(((....((((.((....))))))...)))..---)))(((((((((((....))))))))))))).))))))....)))).. ( -37.60, z-score = -1.17, R) >droPer1.super_15 439491 108 + 2181545 AUGGUGCAAUUUUCCCCAUUAACGCGAAUGGCCAUCGUCAUCGCUAGAGGCGCCCCCAAG---GAGAGAUGCCUGGCAGUGGCCAGGUGUUUGGCGAAAGUCCAAGCCAAA .((((...((((((.(((..(((((...(((((((.((((((....))((((((((...)---).).).)))))))).))))))).)))))))).))))))....)))).. ( -38.10, z-score = -1.20, R) >consensus AUGGUGCAAUUUUCCCCAUUAACGCAAAUUGCC_CGGCGAUAGAGAUUGGCAAGCGUGGA___GGGGGGAUGCCACUUUUGGCCAGAUGUUUGGCGAAAGUCAAAGCGGCU .....((.........((((.......(((((....))))).......(((((..((((.............))))..))).)).))))((((((....)))))))).... (-24.28 = -21.92 + -2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:03 2011