| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,915,664 – 9,915,756 |
| Length | 92 |
| Max. P | 0.612928 |
| Location | 9,915,664 – 9,915,756 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 85.51 |
| Shannon entropy | 0.24249 |
| G+C content | 0.34978 |
| Mean single sequence MFE | -14.74 |
| Consensus MFE | -13.44 |
| Energy contribution | -12.48 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.30 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9915664 92 + 22422827 ACUACAAAUAUUUUACAAUCAAGAGGCACACAAAUUUUGAAAAGUCAUGUCUCGAUCUAAUUAAGUUGAGUCCGGCUAAUCGGAUGUAACAA ......................((((((.........(((....)))))))))...........((((.((((((....)))))).)))).. ( -15.70, z-score = -0.85, R) >droSim1.chrX 7896456 79 + 17042790 -----------UUUAAAAUCAAGAGGCGCACAAAUUUC--AAAGUCAUGCUUCGAUCUAAUUAAGUUGAGUCCGGCUAAUCGGAUGUAACAA -----------...........((((((.((.......--...))..))))))...........((((.((((((....)))))).)))).. ( -15.10, z-score = -1.17, R) >droSec1.super_15 629947 79 + 1954846 -----------UUUACAAUCAAGAGGUGCACAAAUUUC--AAAGUCAUGCUUCGAUCUAAUUAAGUUGAGUCCGGCUAAUCGGAUGUAACAA -----------.(((((.((..(((((......)))))--..((((..(((.((((........)))))))..))))....)).)))))... ( -13.10, z-score = -0.31, R) >droYak2.chrX 18505986 90 + 21770863 AAUACAAAUAUUUAACAAUCACGAGGCACACAAAUUUC--AAAGUCAUGCUUCGAUCUAAUUAAGUUGAGUCCGGCUAAUCGGAUGUUACAA ............((((.....(((((((.((.......--...))..)))))))(((..((((.((((....))))))))..)))))))... ( -16.90, z-score = -1.92, R) >droEre2.scaffold_4690 13556786 90 - 18748788 AAUACAAAUAUUUUACAAUCAAAGGGCAAACAAAUUUC--AAAGUCAUGCUUCGAUCUAAUUAAGCUGAGUCCGGCUAAUCGGAUGUAACAA ............((((.......(((((.((.......--...))..)))))..(((..((((.((((....))))))))..)))))))... ( -12.90, z-score = -0.59, R) >consensus A_UACAAAUAUUUUACAAUCAAGAGGCACACAAAUUUC__AAAGUCAUGCUUCGAUCUAAUUAAGUUGAGUCCGGCUAAUCGGAUGUAACAA ............((((......((((((.((............))..)))))).(((..((((.((((....))))))))..)))))))... (-13.44 = -12.48 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:02 2011