| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,895,036 – 9,895,140 |
| Length | 104 |
| Max. P | 0.857954 |
| Location | 9,895,036 – 9,895,140 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 88.37 |
| Shannon entropy | 0.20977 |
| G+C content | 0.31538 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -15.72 |
| Energy contribution | -16.52 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9895036 104 - 22422827 AUUAUCUCUGGUUGUAAUAAAAUAAUUGGUAGAGUUUAAUAAACGAUUGAUAUCGGCUAUGAUGGUUAGCAAUUGUGGAUCAUCGAUGCUGUUGUUGUUGGGAA ....((((..(((((......)))))..).)))..........((((.((((.((((..((((((((.((....)).))))))))..)))).)))))))).... ( -24.40, z-score = -2.06, R) >droEre2.scaffold_4690 13534918 104 + 18748788 AUUAUCUCUGGUUGUAAUAAAAUAAUUGGUAGAAUUUAAUAAACGAUUGAUAUCGGCUAUGAUGGUUAGCAAUUGUGGAUCAUCGAUGCUGUUGUUGGUGGGAA ....((((..(((((......)))))..).)))..........(.((..(((.((((..((((((((.((....)).))))))))..)))).)))..)).)... ( -28.40, z-score = -3.65, R) >dp4.chrXL_group3a 1127988 104 - 2690836 AUUAUCUCUGGUUGUAAUAAAAUAAUUGGUAGAAUUUAAUAAACGAUUGAUAUCGGCGAUGAUGGUUAGCAAUUGUGGUUCGUCGAUGCUAUUGUUGUUGGGAA ....((((..(((((......)))))..).))).((((((((.((((.(.((((((((((.(..((.....))..).).)))))))))).)))))))))))).. ( -25.90, z-score = -2.61, R) >droWil1.scaffold_181096 9435219 104 + 12416693 AUUAUCUCUGGUUGUAAUAAAAUAAUUGGUAGAAUUUAAUACACGAUUGAUAUCGGCUAUUAUUGUAAGCAAUUGUGGUUCAUCGAUGUCAAUGCUAUUCGAGA ....((((..(((((......)))))..).)))............(((((((((((((((.((((....)))).)))))....))))))))))........... ( -24.30, z-score = -1.91, R) >droVir3.scaffold_12970 3048747 104 + 11907090 AUUAUCUCUGGUUGUAAUAAAAUAAUUGGUAGAGUUUAAUAAUCGAUUUAUAUCGGCUAUAAUUGUAAGUAAUUGUGGUUCUUCGAUAAUAUUGUUGUUGUCUU ....((((..(((((......)))))..).)))...((((((.((((...(((((((((((((((....))))))))))....)))))..)))))))))).... ( -21.50, z-score = -3.06, R) >consensus AUUAUCUCUGGUUGUAAUAAAAUAAUUGGUAGAAUUUAAUAAACGAUUGAUAUCGGCUAUGAUGGUUAGCAAUUGUGGUUCAUCGAUGCUAUUGUUGUUGGGAA ....((((..(((((......)))))..).))).((((((((.((((...(((((((((((((........)))))))....))))))..)))))))))))).. (-15.72 = -16.52 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:30:00 2011