| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,892,919 – 9,893,017 |
| Length | 98 |
| Max. P | 0.996649 |
| Location | 9,892,919 – 9,893,017 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 87.73 |
| Shannon entropy | 0.20641 |
| G+C content | 0.44679 |
| Mean single sequence MFE | -32.82 |
| Consensus MFE | -25.99 |
| Energy contribution | -26.15 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.19 |
| Mean z-score | -3.48 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.96 |
| SVM RNA-class probability | 0.996649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9892919 98 - 22422827 CUAUAUAAUUUCGUACAUCUGUUGCAUAAUAUCUGGCAGUGAAAC---------ACCGGAGAAGAUGAGGCAGCAGCAGCAUCAGCAGCAGAUGUCAAACGAAAGAA ........(((((((((((((((((......(((((.........---------.)))))...((((..((....))..)))).)))))))))))...))))))... ( -35.00, z-score = -5.06, R) >droSim1.chrX_random 674432 98 - 5698898 CUAUAUAAUUUCGUACAUCUGUUGCAUAAUAUCUGGCAGUGAAAC---------GCCGGAGAAGAUGAGGCAGCAGCAGCAUCUGCGGCAGAUGCCAAACGAAAGAA ........((((((.((((((((((......((((((........---------))))))..(((((..((....))..)))))))))))))))....))))))... ( -37.40, z-score = -4.51, R) >droSec1.super_130 44373 98 - 56455 CUAUAUAAUUUCGUAUAUCUGUUGCAUAAUAUCUGGCAGUGAAAC---------GCCGGAGAAGAUGAGGCAGCAGCAGCAUCAGCGGCAGAUGCCAAACGAAAGAA ........((((((.((((((((((......((((((........---------))))))...((((..((....))..)))).))))))))))....))))))... ( -35.10, z-score = -4.17, R) >droYak2.chrX 18487532 107 - 21770863 CUAUAUAAUUUCGUACAUCUGUUGCAUAAUAACUGGCAGUGAAACAACAGAGAAGUUGGACAAGAUGAGCCAGCAGCAGCAGCAGCAGCCGAUGCCAAACGAAAGAA ........((((((.((((.(((((.......(((((..((...((((......))))..))......)))))..((....)).))))).))))....))))))... ( -27.80, z-score = -2.15, R) >droEre2.scaffold_4690 13532720 107 + 18748788 CUAUAUCAUUUCGAACAUCUGUUGCAUAAUAACUGGCAGUGAAACAGCGGAGAAGUUGGAGAAGAUGAGGCAGCAGCAGCAUCAGCAGCAGAUGCCAAACGUAGGAA ((((.((.....)).((((((((((...................((((......)))).....((((..((....))..)))).))))))))))......))))... ( -28.80, z-score = -1.50, R) >consensus CUAUAUAAUUUCGUACAUCUGUUGCAUAAUAUCUGGCAGUGAAAC_________GCCGGAGAAGAUGAGGCAGCAGCAGCAUCAGCAGCAGAUGCCAAACGAAAGAA ........((((((.((((((((((.......(((((.................)))))....((((..((....))..)))).))))))))))....))))))... (-25.99 = -26.15 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:59 2011