| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,890,390 – 9,890,486 |
| Length | 96 |
| Max. P | 0.517044 |
| Location | 9,890,390 – 9,890,486 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 83.68 |
| Shannon entropy | 0.26198 |
| G+C content | 0.45268 |
| Mean single sequence MFE | -26.45 |
| Consensus MFE | -16.74 |
| Energy contribution | -20.55 |
| Covariance contribution | 3.81 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9890390 96 + 22422827 CUUUGGCUAUGCCUUUUGCCUCUAAGCCCAAAUGGAUAAGCGAUGGGCGUGGCACGAUUUAUCUGUUUAGAUAUAGAAAAUAAAUCCACUGCGGUC .....(((((((((.((((.((((........))))...)))).)))))))))..(((((((((((......)))))...)))))).......... ( -26.80, z-score = -1.50, R) >droEre2.scaffold_4690 13530195 72 - 18748788 ----------------------CAG--CCCACUGGACUAGCUAUGGGCGUGGCACGAUUUAUCUGUUUAGAUAUAGAAAAUAAAUCCACUGCGGUC ----------------------..(--((((.(((.....))))))))((((....((((.(((((......)))))))))....))))....... ( -19.60, z-score = -1.60, R) >droSec1.super_130 41924 94 + 56455 CUUUGGCUAUGCCUUUUGCCUCUAG--CCCACUGGAUAAGCGAUGGGCGUGGCACGAUUUAUCUGUUUAGAUAUAGAAAAUAAAUCCACUGCGGUC .....(((((((((.((((.(((((--....)))))...)))).)))))))))..(((((((((((......)))))...)))))).......... ( -29.70, z-score = -2.37, R) >droSim1.chrX_random 671979 94 + 5698898 CUUUGGCUAUGCCUUUUGCCUCUAG--CCCACUGGAUAAGCGAUGGGCGUGGCACGAUUUAUCUGUUUAGAUAUAGAAAAUAAAUCCACUGCGGUC .....(((((((((.((((.(((((--....)))))...)))).)))))))))..(((((((((((......)))))...)))))).......... ( -29.70, z-score = -2.37, R) >consensus CUUUGGCUAUGCCUUUUGCCUCUAG__CCCACUGGAUAAGCGAUGGGCGUGGCACGAUUUAUCUGUUUAGAUAUAGAAAAUAAAUCCACUGCGGUC .....(((((((((.((((.(((((......)))))...)))).)))))))))..(((((((((((......)))))...)))))).......... (-16.74 = -20.55 + 3.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:59 2011