| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,870,743 – 9,870,847 |
| Length | 104 |
| Max. P | 0.600335 |
| Location | 9,870,743 – 9,870,847 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 62.58 |
| Shannon entropy | 0.69572 |
| G+C content | 0.32401 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -7.80 |
| Energy contribution | -8.25 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9870743 104 - 22422827 ---------CCAAUCGUAAGCCGAAAAAAGGGAGAGUUUUAUUGUUCUCCUAUGACUUACG-CUUUGUGUUCAGUGUCAUAU-UUGAUUGUUGAUUAUAUUAAGCUAUAUGGAUG ---------(((...(((((.((......(((((((........))))))).)).)))))(-(((.(((((((..((((...-.))))...)))..)))).))))....)))... ( -22.70, z-score = -1.41, R) >droSim1.chrX 7859941 111 - 17042790 ---CCAAUCGUAUUUGUAAGCCGUAAAAAGGGAGAGUUUUAUUGUUCUCCUAUGACGGAAG-GUUUGUGUUCAGCAUGUCAUAUUGAUUGUUGAUUAUAUUAAGCUAUAUGAAUU ---....((((((.......((((...(.(((((((........))))))).).))))..(-((((((((((((((.(((.....)))))))))..))).))))))))))))... ( -27.00, z-score = -2.29, R) >droSec1.super_130 20329 111 - 56455 ---CCAAUCGUAUUUGUAAGCCGUAAAAAGGGAGAGUUUUAUUGUUCUCCUAUGACGGAAG-GUUUGUGUUCAGCAUGUCAUAUUGAUUGUUGAUUAUAUUAAGCUAUAUGAAUU ---....((((((.......((((...(.(((((((........))))))).).))))..(-((((((((((((((.(((.....)))))))))..))).))))))))))))... ( -27.00, z-score = -2.29, R) >droYak2.chrX 18465163 93 - 21770863 ---------CCAAUCGUU---UGAAAAAAGGGAGAGUUUUAUUGUUCUCCUAUGACGGCAGUCUUUGUGUUCAGCAUAUCAUAUCGAUUGUUGACUAUAUGAAAU---------- ---------....((((.---.(......(((((((........)))))))....((((((((..((((..........))))..)))))))).)...))))...---------- ( -20.40, z-score = -1.03, R) >droEre2.scaffold_4690 13510596 112 + 18748788 ACAAUCGUAUUACACAUA---CGAAAAAAGGGAGAGUUUUAUUGUUCUCCAAUGACGGAAGCUUUUGUGUUCAGUAUAUCAUAUUAAUUUUUGAUUAUAUCAAGCUAAAUGAAAU ....((((((.....)))---)))......((((((........)))))).........(((((.((((.((((................)))).))))..)))))......... ( -18.49, z-score = -0.43, R) >droAna3.scaffold_13337 14569014 86 - 23293914 ---------UUAACCUUU--UCGGGAAAC---AUUGUUUUAGUUCAGUUUGUUAUUGAGGGUCACUUUGGAUAUUAAUAUUUAUUAAUCGAAGAUGAUUC--------------- ---------....(((..--..)))....---...........(((((.....)))))(((((((((((...((((((....))))))))))).))))))--------------- ( -12.40, z-score = 0.50, R) >consensus _________CUAAUCGUA__CCGAAAAAAGGGAGAGUUUUAUUGUUCUCCUAUGACGGAAG_CUUUGUGUUCAGCAUAUCAUAUUGAUUGUUGAUUAUAUUAAGCUAUAUGAAUU .............................(((((((........)))))))..............((((.((((((............)))))).))))................ ( -7.80 = -8.25 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:56 2011