| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,852,274 – 9,852,366 |
| Length | 92 |
| Max. P | 0.616891 |
| Location | 9,852,274 – 9,852,366 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 67.37 |
| Shannon entropy | 0.56572 |
| G+C content | 0.50313 |
| Mean single sequence MFE | -17.96 |
| Consensus MFE | -9.58 |
| Energy contribution | -10.26 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.616891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9852274 92 - 22422827 UCAUCAGCAGCAGUUGGCCUUUUCUUUUGGCUUAGACUGCUCCUUC-------UCCUAUGACUUUUGCCCCUCAACAGCCGCCCUAUUAACCCCCUUGU ......(((((((((((((.........))))..))))))).....-------......(.((.(((.....))).)).)))................. ( -15.10, z-score = -0.18, R) >droSim1.chrX 7853330 91 - 17042790 UCAUCAGCAGCAGUUGGCCUUUACUUUUGGCUUAAACUGCUCCUUC-------UCCUGUGACUGUUGCCCCCCAACAGCUCCCUUAUUAACCCCUUGG- .....((.(((((((((((.........))))..))))))).))..-------......((((((((.....)))))).)).................- ( -20.40, z-score = -1.83, R) >droSec1.super_463 4008 87 - 10562 -----AGCAGCAGUUGGCCUUUACUUUUGGCUUAAACUGCUCCUUC-------UCCUGUGACUGUUGCCCCCCAACAGCCCCCCUAUUAACCCCCUUGU -----((.(((((((((((.........))))..))))))).))..-------........((((((.....))))))..................... ( -19.40, z-score = -2.32, R) >droEre2.scaffold_4690 13490637 90 + 18748788 UCAUCAGCAGCAGUUGGCC-UUUCUUUUGGCUUAGACUGCUCCUUC-------UCCUGUGACUUUUGCCCCACAACUGCCCCCCU-UUAACCCCCUUGU ......(((((((((((((-........))))..))))))......-------...((((..........))))..)))......-............. ( -18.00, z-score = -1.52, R) >droVir3.scaffold_13049 9886730 98 + 25233164 GAGUGAGCAAAUGUUUGACAACCCUGUUGCUGCUGUUUAGUUCGGCAAAUGCGCCCAGUAAGAGCCACCCCUCGAUUGGCCUUUCUUUCUUUUUUUAA- (((((((((...((..((((....))))))...)))))).)))(((......))).((.(((.((((.........))))))).))............- ( -16.90, z-score = 1.20, R) >consensus UCAUCAGCAGCAGUUGGCCUUUACUUUUGGCUUAGACUGCUCCUUC_______UCCUGUGACUGUUGCCCCCCAACAGCCCCCCUAUUAACCCCCUUGU ......(.(((((((((((.........))))..))))))).)..................((((((.....))))))..................... ( -9.58 = -10.26 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:54 2011