| Sequence ID | dm3.chr2L |
|---|---|
| Location | 10,799,562 – 10,799,655 |
| Length | 93 |
| Max. P | 0.931334 |
| Location | 10,799,562 – 10,799,655 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Shannon entropy | 0.36132 |
| G+C content | 0.41544 |
| Mean single sequence MFE | -15.97 |
| Consensus MFE | -14.39 |
| Energy contribution | -14.20 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931334 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 10799562 93 - 23011544 CCUAGAUAAUAAACAUUAAUCUUAAUGGCAUUGUCGCUGGGCUAUCCAGCUACCAACUACCAGAUACUAGCUACCAGCUACCGACUAAAACGA ....((((((...(((((....)))))..))))))(((((.....))))).................((((.....))))............. ( -17.90, z-score = -1.60, R) >droSec1.super_3 6217945 86 - 7220098 CCUAGAUAAUAAACAUUAAGCUUAAUGGCAUUGUCGCUGGGCUAUUCAGCUACCAACUACCAACUACCAGCUAAUAACUACCACAA------- ....((((((...(((((....)))))..))))))(((((..........................)))))...............------- ( -14.17, z-score = -0.86, R) >droYak2.chr2L 7205700 72 - 22324452 UAUAGAUAAUAAACAUUAAGCUUAAUGGCAUUGUCGCUGGGCUAUCCAGCUACCAACUACCAGCUACC-ACG-A------------------- ....((((((...(((((....)))))..))))))(((((.....)))))..................-...-.------------------- ( -14.90, z-score = -1.19, R) >droEre2.scaffold_4929 12010326 79 + 26641161 UAUAGAUAAUAAACAUUAAGCCUAAUGGCAUUGUCGCUGGGCUAUCCAGCUACCAGCUACCAACUACCAACU-ACAACGG------------- ....((((((...(((((....)))))..))))))((((((((....)))..)))))...............-.......------------- ( -16.90, z-score = -1.71, R) >consensus CAUAGAUAAUAAACAUUAAGCUUAAUGGCAUUGUCGCUGGGCUAUCCAGCUACCAACUACCAACUACCAACU_ACAACUA_____________ ....((((((...(((((....)))))..))))))(((((.....)))))........................................... (-14.39 = -14.20 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:30:59 2011