| Sequence ID | dm3.chrX |
|---|---|
| Location | 9,838,509 – 9,838,611 |
| Length | 102 |
| Max. P | 0.843476 |
| Location | 9,838,509 – 9,838,611 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 86.88 |
| Shannon entropy | 0.26348 |
| G+C content | 0.46946 |
| Mean single sequence MFE | -32.57 |
| Consensus MFE | -19.46 |
| Energy contribution | -21.37 |
| Covariance contribution | 1.91 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.843476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 9838509 102 + 22422827 GACAAUUGCAUUUGGGUAACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAGAUCGGAAGUGGAAGUGGAAAUGGCCGCAAGGCAAAAUCGCUUC-CACAGUUCA (((..(((.((((((((....(((((((...))))))).....))).))))))))..((((((((((.....(((....)))....)))))))-))).))).. ( -36.90, z-score = -3.44, R) >droSim1.chrX_random 5015284 102 - 5698898 GACAAUUGCAUUUGGGUAACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAGAUCGGAAGUGGAUGUGGAAAUGGCCGCAAGGCAAAAUCGCUUC-CACAGUUCA (((..(((.((((((((....(((((((...))))))).....))).))))))))..(((((.((((.....(((....)))....)))).))-))).))).. ( -32.80, z-score = -2.02, R) >droSec1.super_15 603261 102 + 1954846 GACAAUUGCAUUUGGGUAACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAGAUCGGAAGUGGAUGUGGAAAUGGCCGCAAGGCAAAAUCGCAUC-CACAGUUCA (((..(((.((((((((....(((((((...))))))).....))).))))))))..((((((((((.....(((....)))....)))))))-))).))).. ( -37.10, z-score = -3.52, R) >droYak2.chrX 18431339 102 + 21770863 GACAAUUGCAUUUGGGUAACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAGAUCGGAAGUGGAAGUGGAAAUGGCCGCAAGGCAAAAUCGCUUC-CACAGUUCA (((..(((.((((((((....(((((((...))))))).....))).))))))))..((((((((((.....(((....)))....)))))))-))).))).. ( -36.90, z-score = -3.44, R) >droEre2.scaffold_4690 13476954 102 - 18748788 GACAAUUGCAUUUGGGUAACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAGAUCGGAAGUGGAAGUGGAAAUGGCCGCAAGGCAAAAUCGCUUC-CACAGUUCA (((..(((.((((((((....(((((((...))))))).....))).))))))))..((((((((((.....(((....)))....)))))))-))).))).. ( -36.90, z-score = -3.44, R) >droAna3.scaffold_13047 216764 97 + 1816235 GACAAUUGCAUUUGGGUAACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAUAUCGGAA------GUGGAAAUGGCCGCCGGGCGAAAUCGCUUCGCACAAUUCA ((....(((.....(((....(((((((...)))))))....((((......(....------).......)))))))(((((....))))).)))....)). ( -25.32, z-score = 0.16, R) >droGri2.scaffold_15203 358421 78 - 11997470 GACAAUCGCAUUUGGA-AACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAGAUCGGAU------------GUAUCCAAAAGGCAAAGCCGUU------------ .....((((.((((..-..)))).))))...........(((((((((.....(((.------------...))).....))..)))))))------------ ( -22.10, z-score = -1.77, R) >consensus GACAAUUGCAUUUGGGUAACGGAAGCGAAAAUUGCUUCAAAUGGCUGCAGAUCGGAAGUGGAAGUGGAAAUGGCCGCAAGGCAAAAUCGCUUC_CACAGUUCA .....(((.((((((((....(((((((...))))))).....))).))))))))..(((((.((((.....(((....)))....)))).)).)))...... (-19.46 = -21.37 + 1.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:29:50 2011